Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 RN7SKP220-201ENST00000410611 288 ntBASIC4.39□□□□□ -1.71
CCDC61Q9Y6R9 RNU2-48P-201ENST00000410694 191 ntBASIC4.39□□□□□ -1.71
CCDC61Q9Y6R9 RNU7-48P-201ENST00000458875 63 ntBASIC4.39□□□□□ -1.71
CCDC61Q9Y6R9 AC006483.1-201ENST00000487308 313 ntBASIC4.39□□□□□ -1.71
CCDC61Q9Y6R9 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC61Q9Y6R9 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.38□□□□□ -1.71
CCDC61Q9Y6R9 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC61Q9Y6R9 RNA5SP133-201ENST00000363368 119 ntBASIC4.38□□□□□ -1.71
CCDC61Q9Y6R9 RNU6-471P-201ENST00000383944 106 ntBASIC4.38□□□□□ -1.71
CCDC61Q9Y6R9 RNU6-1086P-201ENST00000410930 100 ntBASIC4.38□□□□□ -1.71
CCDC61Q9Y6R9 AL606517.2-201ENST00000442855 241 ntBASIC4.38□□□□□ -1.71
CCDC61Q9Y6R9 MIR4796-201ENST00000580742 81 ntBASIC4.38□□□□□ -1.71
CCDC61Q9Y6R9 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC61Q9Y6R9 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.38□□□□□ -1.71
CCDC61Q9Y6R9 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC61Q9Y6R9 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC61Q9Y6R9 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC61Q9Y6R9 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC61Q9Y6R9 RNU6-862P-201ENST00000362804 105 ntBASIC4.37□□□□□ -1.71
CCDC61Q9Y6R9 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC61Q9Y6R9 RNU6-1108P-201ENST00000516308 104 ntBASIC4.37□□□□□ -1.71
CCDC61Q9Y6R9 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC61Q9Y6R9 MIR3199-1-201ENST00000582434 88 ntBASIC4.37□□□□□ -1.71
CCDC61Q9Y6R9 AL356280.1-201ENST00000603614 379 ntBASIC4.37□□□□□ -1.71
CCDC61Q9Y6R9 PLD1-217ENST00000627725 174 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC61Q9Y6R9 U6.111-201ENST00000636093 83 ntBASIC4.37□□□□□ -1.71
CCDC61Q9Y6R9 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC61Q9Y6R9 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
CCDC61Q9Y6R9 AL355596.1-201ENST00000565399 3996 ntBASIC4.37□□□□□ -1.71
CCDC61Q9Y6R9 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
CCDC61Q9Y6R9 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
CCDC61Q9Y6R9 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC61Q9Y6R9 RNU6-833P-201ENST00000363486 107 ntBASIC4.36□□□□□ -1.71
CCDC61Q9Y6R9 RNU6-913P-201ENST00000390913 95 ntBASIC4.36□□□□□ -1.71
CCDC61Q9Y6R9 MIR2276-201ENST00000516886 89 ntBASIC4.36□□□□□ -1.71
CCDC61Q9Y6R9 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC4.36□□□□□ -1.71
CCDC61Q9Y6R9 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC4.36□□□□□ -1.71
CCDC61Q9Y6R9 MIR4484-201ENST00000582855 83 ntBASIC4.36□□□□□ -1.71
CCDC61Q9Y6R9 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC4.36□□□□□ -1.71
CCDC61Q9Y6R9 MIR7106-201ENST00000612419 65 ntBASIC4.36□□□□□ -1.71
CCDC61Q9Y6R9 MIR8066-201ENST00000617280 78 ntBASIC4.36□□□□□ -1.71
CCDC61Q9Y6R9 AC105081.1-201ENST00000617727 106 ntBASIC4.36□□□□□ -1.71
CCDC61Q9Y6R9 UCA1.1-201ENST00000620952 75 ntBASIC4.36□□□□□ -1.71
CCDC61Q9Y6R9 AP001362.1-201ENST00000625165 124 ntBASIC4.36□□□□□ -1.71
CCDC61Q9Y6R9 AL137790.1-201ENST00000634283 177 ntBASIC4.36□□□□□ -1.71
CCDC61Q9Y6R9 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC61Q9Y6R9 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC61Q9Y6R9 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.36□□□□□ -1.71
CCDC61Q9Y6R9 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
CCDC61Q9Y6R9 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC61Q9Y6R9 AP000648.3-201ENST00000623539 4507 ntBASIC4.35□□□□□ -1.71
CCDC61Q9Y6R9 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC4.35□□□□□ -1.71
CCDC61Q9Y6R9 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
CCDC61Q9Y6R9 RNU5F-1-201ENST00000362507 117 ntBASIC4.35□□□□□ -1.71
CCDC61Q9Y6R9 Y_RNA.99-201ENST00000363138 105 ntBASIC4.35□□□□□ -1.71
CCDC61Q9Y6R9 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
CCDC61Q9Y6R9 RNU6-587P-201ENST00000391282 106 ntBASIC4.35□□□□□ -1.71
CCDC61Q9Y6R9 SEM1P1-201ENST00000506694 209 ntBASIC4.35□□□□□ -1.71
CCDC61Q9Y6R9 VWA8P1-201ENST00000510889 176 ntBASIC4.35□□□□□ -1.71
CCDC61Q9Y6R9 AL512598.1-201ENST00000610158 273 ntBASIC4.35□□□□□ -1.71
CCDC61Q9Y6R9 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC4.35□□□□□ -1.71
CCDC61Q9Y6R9 AC243994.1-201ENST00000618627 109 ntBASIC4.35□□□□□ -1.71
CCDC61Q9Y6R9 MIR8054-201ENST00000620877 86 ntBASIC4.35□□□□□ -1.71
CCDC61Q9Y6R9 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC61Q9Y6R9 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC61Q9Y6R9 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC61Q9Y6R9 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC61Q9Y6R9 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC61Q9Y6R9 GABRG2-229ENST00000641017 3628 ntBASIC4.34□□□□□ -1.71
CCDC61Q9Y6R9 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC61Q9Y6R9 AC245060.5-201ENST00000610778 3293 ntBASIC4.34□□□□□ -1.71
CCDC61Q9Y6R9 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC4.34□□□□□ -1.71
CCDC61Q9Y6R9 SNORD114-6-201ENST00000364393 72 ntBASIC4.34□□□□□ -1.71
CCDC61Q9Y6R9 Y_RNA.354-201ENST00000365448 111 ntBASIC4.34□□□□□ -1.71
CCDC61Q9Y6R9 RNU6-160P-201ENST00000384591 107 ntBASIC4.34□□□□□ -1.71
CCDC61Q9Y6R9 RNA5SP109-201ENST00000391010 116 ntBASIC4.34□□□□□ -1.71
CCDC61Q9Y6R9 RNU6-141P-201ENST00000410499 105 ntBASIC4.34□□□□□ -1.71
CCDC61Q9Y6R9 AC093423.1-201ENST00000440817 142 ntBASIC4.34□□□□□ -1.71
CCDC61Q9Y6R9 RNU7-79P-201ENST00000516082 62 ntBASIC4.34□□□□□ -1.71
CCDC61Q9Y6R9 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
CCDC61Q9Y6R9 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC61Q9Y6R9 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.72
CCDC61Q9Y6R9 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC61Q9Y6R9 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
CCDC61Q9Y6R9 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC61Q9Y6R9 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC61Q9Y6R9 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC61Q9Y6R9 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC61Q9Y6R9 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC61Q9Y6R9 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC61Q9Y6R9 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC4.33□□□□□ -1.72
CCDC61Q9Y6R9 RNU6-1077P-201ENST00000410506 102 ntBASIC4.33□□□□□ -1.72
CCDC61Q9Y6R9 HMGN2P7-201ENST00000456186 273 ntBASIC4.33□□□□□ -1.72
CCDC61Q9Y6R9 RNU7-137P-201ENST00000516788 62 ntBASIC4.33□□□□□ -1.72
CCDC61Q9Y6R9 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC4.33□□□□□ -1.72
CCDC61Q9Y6R9 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC61Q9Y6R9 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC61Q9Y6R9 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC61Q9Y6R9 CPD-202ENST00000543464 4007 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC61Q9Y6R9 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 185.6 ms