Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 MIR802-201ENST00000390235 94 ntBASIC1.84□□□□□ -2.11
PTCHD3Q3KNS1 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
PTCHD3Q3KNS1 SNORD72-201ENST00000390994 80 ntBASIC1.84□□□□□ -2.11
PTCHD3Q3KNS1 RNU2-70P-201ENST00000410718 179 ntBASIC1.84□□□□□ -2.11
PTCHD3Q3KNS1 AL161935.2-201ENST00000414627 60 ntBASIC1.84□□□□□ -2.11
PTCHD3Q3KNS1 SNRPGP14-201ENST00000435400 219 ntBASIC1.84□□□□□ -2.11
PTCHD3Q3KNS1 AC003989.2-201ENST00000440224 169 ntBASIC1.84□□□□□ -2.11
PTCHD3Q3KNS1 HMGN2P23-201ENST00000456759 269 ntBASIC1.84□□□□□ -2.11
PTCHD3Q3KNS1 RNU7-12P-201ENST00000516030 62 ntBASIC1.84□□□□□ -2.11
PTCHD3Q3KNS1 MIR378D2-201ENST00000580636 98 ntBASIC1.84□□□□□ -2.11
PTCHD3Q3KNS1 AL442644.1-201ENST00000454390 3105 ntBASIC1.84□□□□□ -2.12
PTCHD3Q3KNS1 ZNF355P-201ENST00000427301 3216 ntBASIC1.83□□□□□ -2.12
PTCHD3Q3KNS1 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.83□□□□□ -2.12
PTCHD3Q3KNS1 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
PTCHD3Q3KNS1 Y_RNA.272-201ENST00000364696 102 ntBASIC1.83□□□□□ -2.12
PTCHD3Q3KNS1 AC004965.1-201ENST00000413033 213 ntBASIC1.83□□□□□ -2.12
PTCHD3Q3KNS1 CYCSP49-201ENST00000420810 319 ntBASIC1.83□□□□□ -2.12
PTCHD3Q3KNS1 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.83□□□□□ -2.12
PTCHD3Q3KNS1 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.83□□□□□ -2.12
PTCHD3Q3KNS1 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.83□□□□□ -2.12
PTCHD3Q3KNS1 RNU6-268P-201ENST00000364174 107 ntBASIC1.82□□□□□ -2.12
PTCHD3Q3KNS1 SUMO2P12-201ENST00000405924 140 ntBASIC1.82□□□□□ -2.12
PTCHD3Q3KNS1 HMGN2P19-201ENST00000425149 265 ntBASIC1.82□□□□□ -2.12
PTCHD3Q3KNS1 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.82□□□□□ -2.12
PTCHD3Q3KNS1 RNU6-1116P-201ENST00000517269 99 ntBASIC1.82□□□□□ -2.12
PTCHD3Q3KNS1 MIR3144-201ENST00000579460 79 ntBASIC1.82□□□□□ -2.12
PTCHD3Q3KNS1 AL353997.5-201ENST00000618886 171 ntBASIC1.82□□□□□ -2.12
PTCHD3Q3KNS1 SNORD3E-202ENST00000627253 216 ntBASIC1.82□□□□□ -2.12
PTCHD3Q3KNS1 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
PTCHD3Q3KNS1 Y_RNA.66-201ENST00000362862 102 ntBASIC1.81□□□□□ -2.12
PTCHD3Q3KNS1 RNU6-597P-201ENST00000365620 102 ntBASIC1.81□□□□□ -2.12
PTCHD3Q3KNS1 RNU6-203P-201ENST00000384038 104 ntBASIC1.81□□□□□ -2.12
PTCHD3Q3KNS1 SNORA26.9-201ENST00000391322 122 ntBASIC1.81□□□□□ -2.12
PTCHD3Q3KNS1 AC006461.1-201ENST00000412637 326 ntBASIC1.81□□□□□ -2.12
PTCHD3Q3KNS1 SNRPGP13-201ENST00000442212 177 ntBASIC1.81□□□□□ -2.12
PTCHD3Q3KNS1 RN7SL274P-201ENST00000492268 272 ntBASIC1.81□□□□□ -2.12
PTCHD3Q3KNS1 RNU6-830P-201ENST00000516353 107 ntBASIC1.81□□□□□ -2.12
PTCHD3Q3KNS1 SNORD116-25-201ENST00000516517 92 ntBASIC1.81□□□□□ -2.12
PTCHD3Q3KNS1 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.81□□□□□ -2.12
PTCHD3Q3KNS1 MIR8074-201ENST00000615081 81 ntBASIC1.81□□□□□ -2.12
PTCHD3Q3KNS1 RNU6-888P-201ENST00000363010 101 ntBASIC1.8□□□□□ -2.12
PTCHD3Q3KNS1 Y_RNA.91-201ENST00000363042 107 ntBASIC1.8□□□□□ -2.12
PTCHD3Q3KNS1 MIR452-201ENST00000385020 85 ntBASIC1.8□□□□□ -2.12
PTCHD3Q3KNS1 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
PTCHD3Q3KNS1 RNU6-482P-201ENST00000391068 107 ntBASIC1.8□□□□□ -2.12
PTCHD3Q3KNS1 RNA5SP489-201ENST00000410986 109 ntBASIC1.8□□□□□ -2.12
PTCHD3Q3KNS1 SNORA44.1-201ENST00000517031 108 ntBASIC1.8□□□□□ -2.12
PTCHD3Q3KNS1 SNORA77B-201ENST00000578179 125 ntBASIC1.8□□□□□ -2.12
PTCHD3Q3KNS1 AC103810.8-201ENST00000607347 118 ntBASIC1.8□□□□□ -2.12
PTCHD3Q3KNS1 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.8□□□□□ -2.12
PTCHD3Q3KNS1 RNU6-978P-201ENST00000364371 103 ntBASIC1.79□□□□□ -2.12
PTCHD3Q3KNS1 SNORA16.1-201ENST00000364597 132 ntBASIC1.79□□□□□ -2.12
PTCHD3Q3KNS1 RNU6-449P-201ENST00000383914 107 ntBASIC1.79□□□□□ -2.12
PTCHD3Q3KNS1 SNORD38C-201ENST00000384381 69 ntBASIC1.79□□□□□ -2.12
PTCHD3Q3KNS1 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
PTCHD3Q3KNS1 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
PTCHD3Q3KNS1 MIR1267-201ENST00000408723 78 ntBASIC1.79□□□□□ -2.12
PTCHD3Q3KNS1 RNA5SP182-201ENST00000516064 82 ntBASIC1.79□□□□□ -2.12
PTCHD3Q3KNS1 Y_RNA.666-201ENST00000516187 112 ntBASIC1.79□□□□□ -2.12
PTCHD3Q3KNS1 MIR3646-201ENST00000578301 84 ntBASIC1.79□□□□□ -2.12
PTCHD3Q3KNS1 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.78□□□□□ -2.12
PTCHD3Q3KNS1 Y_RNA.393-201ENST00000383936 102 ntBASIC1.78□□□□□ -2.12
PTCHD3Q3KNS1 Y_RNA.521-201ENST00000384560 114 ntBASIC1.78□□□□□ -2.12
PTCHD3Q3KNS1 AC015922.2-201ENST00000435593 184 ntBASIC1.78□□□□□ -2.12
PTCHD3Q3KNS1 AC090142.3-201ENST00000519012 385 ntBASIC1.78□□□□□ -2.12
PTCHD3Q3KNS1 DNAJC19P2-201ENST00000593340 302 ntBASIC1.78□□□□□ -2.12
PTCHD3Q3KNS1 MTND1P7-201ENST00000632801 297 ntBASIC1.78□□□□□ -2.12
PTCHD3Q3KNS1 AC095038.3-201ENST00000634439 195 ntBASIC1.78□□□□□ -2.12
PTCHD3Q3KNS1 RNU6-199P-201ENST00000362954 107 ntBASIC1.77□□□□□ -2.13
PTCHD3Q3KNS1 RNU6-439P-201ENST00000384188 106 ntBASIC1.77□□□□□ -2.13
PTCHD3Q3KNS1 SNORD61-201ENST00000384252 73 ntBASIC1.77□□□□□ -2.13
PTCHD3Q3KNS1 RNU6-804P-201ENST00000384286 107 ntBASIC1.77□□□□□ -2.13
PTCHD3Q3KNS1 Y_RNA.542-201ENST00000384641 111 ntBASIC1.77□□□□□ -2.13
PTCHD3Q3KNS1 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.77□□□□□ -2.13
PTCHD3Q3KNS1 RNU6-693P-201ENST00000516134 107 ntBASIC1.77□□□□□ -2.13
PTCHD3Q3KNS1 AC012493.3-201ENST00000604494 112 ntBASIC1.77□□□□□ -2.13
PTCHD3Q3KNS1 AC104465.1-201ENST00000611365 139 ntBASIC1.77□□□□□ -2.13
PTCHD3Q3KNS1 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.77□□□□□ -2.13
PTCHD3Q3KNS1 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.77□□□□□ -2.13
PTCHD3Q3KNS1 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.76□□□□□ -2.13
PTCHD3Q3KNS1 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
PTCHD3Q3KNS1 SNORA25.7-201ENST00000364375 127 ntBASIC1.76□□□□□ -2.13
PTCHD3Q3KNS1 RNU6-1292P-201ENST00000383856 107 ntBASIC1.76□□□□□ -2.13
PTCHD3Q3KNS1 MIR30A-201ENST00000385092 71 ntBASIC1.76□□□□□ -2.13
PTCHD3Q3KNS1 MIR548O-201ENST00000408583 114 ntBASIC1.76□□□□□ -2.13
PTCHD3Q3KNS1 RNU6-255P-201ENST00000516957 105 ntBASIC1.76□□□□□ -2.13
PTCHD3Q3KNS1 AL365205.2-201ENST00000594586 68 ntBASIC1.76□□□□□ -2.13
PTCHD3Q3KNS1 AC021753.1-201ENST00000635724 168 ntBASIC1.76□□□□□ -2.13
PTCHD3Q3KNS1 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
PTCHD3Q3KNS1 RNU1-17P-201ENST00000363022 152 ntBASIC1.75□□□□□ -2.13
PTCHD3Q3KNS1 SNORA2.2-201ENST00000365473 135 ntBASIC1.75□□□□□ -2.13
PTCHD3Q3KNS1 RNY1P5-201ENST00000383890 115 ntBASIC1.75□□□□□ -2.13
PTCHD3Q3KNS1 MIR548A2-201ENST00000384956 97 ntBASIC1.75□□□□□ -2.13
PTCHD3Q3KNS1 MIR9-3-201ENST00000385084 90 ntBASIC1.75□□□□□ -2.13
PTCHD3Q3KNS1 MIR136-201ENST00000385207 82 ntBASIC1.75□□□□□ -2.13
PTCHD3Q3KNS1 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.75□□□□□ -2.13
PTCHD3Q3KNS1 AC093850.1-201ENST00000454121 251 ntBASIC1.75□□□□□ -2.13
PTCHD3Q3KNS1 RPS29P11-201ENST00000496507 171 ntBASIC1.75□□□□□ -2.13
PTCHD3Q3KNS1 AC007751.1-201ENST00000529260 376 ntBASIC1.75□□□□□ -2.13
PTCHD3Q3KNS1 MIR4419B-201ENST00000577260 68 ntBASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 301.8 ms