Protein–RNA interactions for Protein: A6NCS4

NKX2-6, Homeobox protein Nkx-2.6, humanhuman

Predictions only

Length 301 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-6A6NCS4 AC027335.2-201ENST00000624030 375 ntBASIC0.79□□□□□ -2.28
NKX2-6A6NCS4 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
NKX2-6A6NCS4 Y_RNA.136-201ENST00000363444 102 ntBASIC0.78□□□□□ -2.28
NKX2-6A6NCS4 SNORD14E-201ENST00000364009 85 ntBASIC0.78□□□□□ -2.28
NKX2-6A6NCS4 RNU4-10P-201ENST00000364383 140 ntBASIC0.78□□□□□ -2.28
NKX2-6A6NCS4 RNU6-290P-201ENST00000365212 101 ntBASIC0.78□□□□□ -2.28
NKX2-6A6NCS4 MIR520C-201ENST00000385005 87 ntBASIC0.78□□□□□ -2.28
NKX2-6A6NCS4 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.78□□□□□ -2.28
NKX2-6A6NCS4 SNORD28B-201ENST00000390993 75 ntBASIC0.78□□□□□ -2.28
NKX2-6A6NCS4 RPL39P39-201ENST00000455840 151 ntBASIC0.78□□□□□ -2.28
NKX2-6A6NCS4 MTATP8P1-201ENST00000467115 207 ntBASIC0.78□□□□□ -2.28
NKX2-6A6NCS4 SNORA74.3-201ENST00000517108 154 ntBASIC0.78□□□□□ -2.28
NKX2-6A6NCS4 DEFB108E-201ENST00000524692 240 ntBASIC0.78□□□□□ -2.28
NKX2-6A6NCS4 MIR4714-201ENST00000580728 77 ntBASIC0.78□□□□□ -2.28
NKX2-6A6NCS4 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC0.78□□□□□ -2.28
NKX2-6A6NCS4 AL512605.2-201ENST00000592972 256 ntBASIC0.78□□□□□ -2.28
NKX2-6A6NCS4 AL357312.1-201ENST00000603879 298 ntBASIC0.78□□□□□ -2.28
NKX2-6A6NCS4 AL355297.3-201ENST00000604082 446 ntBASIC0.78□□□□□ -2.28
NKX2-6A6NCS4 Y_RNA.84-201ENST00000363011 104 ntBASIC0.77□□□□□ -2.29
NKX2-6A6NCS4 RNU6-969P-201ENST00000383900 105 ntBASIC0.77□□□□□ -2.29
NKX2-6A6NCS4 MIR216A-201ENST00000385063 110 ntBASIC0.77□□□□□ -2.29
NKX2-6A6NCS4 SNORA75.2-201ENST00000391138 150 ntBASIC0.77□□□□□ -2.29
NKX2-6A6NCS4 SNORA75.3-201ENST00000391231 150 ntBASIC0.77□□□□□ -2.29
NKX2-6A6NCS4 AL603910.2-201ENST00000407268 136 ntBASIC0.77□□□□□ -2.29
NKX2-6A6NCS4 RNU6-985P-201ENST00000410182 104 ntBASIC0.77□□□□□ -2.29
NKX2-6A6NCS4 BTF3P11-201ENST00000426582 477 ntBASIC0.77□□□□□ -2.29
NKX2-6A6NCS4 AC005534.2-201ENST00000431047 433 ntBASIC0.77□□□□□ -2.29
NKX2-6A6NCS4 AC002429.1-201ENST00000437672 148 ntBASIC0.77□□□□□ -2.29
NKX2-6A6NCS4 SNORD123-201ENST00000459473 70 ntBASIC0.77□□□□□ -2.29
NKX2-6A6NCS4 SNORD124-201ENST00000459577 104 ntBASIC0.77□□□□□ -2.29
NKX2-6A6NCS4 AC091959.1-201ENST00000495857 238 ntBASIC0.77□□□□□ -2.29
NKX2-6A6NCS4 SNORA31.4-201ENST00000516049 129 ntBASIC0.77□□□□□ -2.29
NKX2-6A6NCS4 SNORD116-28-201ENST00000516123 91 ntBASIC0.77□□□□□ -2.29
NKX2-6A6NCS4 RNU2-31P-201ENST00000516954 155 ntBASIC0.77□□□□□ -2.29
NKX2-6A6NCS4 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
NKX2-6A6NCS4 RN7SL793P-201ENST00000583259 296 ntBASIC0.77□□□□□ -2.29
NKX2-6A6NCS4 AC044792.1-201ENST00000593294 196 ntBASIC0.77□□□□□ -2.29
NKX2-6A6NCS4 AC008163.1-202ENST00000636004 2889 ntBASIC0.77□□□□□ -2.29
NKX2-6A6NCS4 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.76□□□□□ -2.29
NKX2-6A6NCS4 RNU6-1205P-201ENST00000363625 106 ntBASIC0.76□□□□□ -2.29
NKX2-6A6NCS4 RNU6-899P-201ENST00000363947 107 ntBASIC0.76□□□□□ -2.29
NKX2-6A6NCS4 RNU6-268P-201ENST00000364174 107 ntBASIC0.76□□□□□ -2.29
NKX2-6A6NCS4 RNU6-639P-201ENST00000384074 107 ntBASIC0.76□□□□□ -2.29
NKX2-6A6NCS4 Y_RNA.572-201ENST00000384757 98 ntBASIC0.76□□□□□ -2.29
NKX2-6A6NCS4 MIR802-201ENST00000390235 94 ntBASIC0.76□□□□□ -2.29
NKX2-6A6NCS4 SNORD11-201ENST00000459124 84 ntBASIC0.76□□□□□ -2.29
NKX2-6A6NCS4 SNORD79.1-201ENST00000516069 84 ntBASIC0.76□□□□□ -2.29
NKX2-6A6NCS4 Y_RNA.714-201ENST00000517065 90 ntBASIC0.76□□□□□ -2.29
NKX2-6A6NCS4 AP003072.1-201ENST00000531740 145 ntBASIC0.76□□□□□ -2.29
NKX2-6A6NCS4 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.76□□□□□ -2.29
NKX2-6A6NCS4 MIR4764-201ENST00000580680 88 ntBASIC0.76□□□□□ -2.29
NKX2-6A6NCS4 MIR548AR-201ENST00000582191 57 ntBASIC0.76□□□□□ -2.29
NKX2-6A6NCS4 PRELID3BP2-201ENST00000605362 201 ntBASIC0.76□□□□□ -2.29
NKX2-6A6NCS4 AC022140.2-201ENST00000623500 188 ntBASIC0.76□□□□□ -2.29
NKX2-6A6NCS4 snoU18.1-201ENST00000629629 71 ntBASIC0.76□□□□□ -2.29
NKX2-6A6NCS4 AL391516.1-201ENST00000554380 2449 ntBASIC0.76□□□□□ -2.29
NKX2-6A6NCS4 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.76□□□□□ -2.29
NKX2-6A6NCS4 SNORA25.1-201ENST00000362326 128 ntBASIC0.75□□□□□ -2.29
NKX2-6A6NCS4 RNU6-1272P-201ENST00000362776 107 ntBASIC0.75□□□□□ -2.29
NKX2-6A6NCS4 RNU6-238P-201ENST00000363313 106 ntBASIC0.75□□□□□ -2.29
NKX2-6A6NCS4 RNU6-674P-201ENST00000363831 107 ntBASIC0.75□□□□□ -2.29
NKX2-6A6NCS4 Y_RNA.293-201ENST00000364908 93 ntBASIC0.75□□□□□ -2.29
NKX2-6A6NCS4 Y_RNA.330-201ENST00000365230 109 ntBASIC0.75□□□□□ -2.29
NKX2-6A6NCS4 RNU6-1227P-201ENST00000383981 107 ntBASIC0.75□□□□□ -2.29
NKX2-6A6NCS4 RNU6-1248P-201ENST00000391096 64 ntBASIC0.75□□□□□ -2.29
NKX2-6A6NCS4 SNRPGP14-201ENST00000435400 219 ntBASIC0.75□□□□□ -2.29
NKX2-6A6NCS4 RNU7-181P-201ENST00000517234 74 ntBASIC0.75□□□□□ -2.29
NKX2-6A6NCS4 AC008507.4-201ENST00000585464 127 ntBASIC0.75□□□□□ -2.29
NKX2-6A6NCS4 AL049861.1-201ENST00000603130 150 ntBASIC0.75□□□□□ -2.29
NKX2-6A6NCS4 AL008718.3-201ENST00000610217 321 ntBASIC0.75□□□□□ -2.29
NKX2-6A6NCS4 AC108706.1-201ENST00000611053 297 ntBASIC0.75□□□□□ -2.29
NKX2-6A6NCS4 AL391903.3-201ENST00000612158 163 ntBASIC0.75□□□□□ -2.29
NKX2-6A6NCS4 AC013791.1-201ENST00000616619 62 ntBASIC0.75□□□□□ -2.29
NKX2-6A6NCS4 Y_RNA.117-201ENST00000363294 101 ntBASIC0.74□□□□□ -2.29
NKX2-6A6NCS4 RNU1-124P-201ENST00000363861 145 ntBASIC0.74□□□□□ -2.29
NKX2-6A6NCS4 RNU6-442P-201ENST00000383968 104 ntBASIC0.74□□□□□ -2.29
NKX2-6A6NCS4 SNORA53-201ENST00000391141 249 ntBASIC0.74□□□□□ -2.29
NKX2-6A6NCS4 RNU6-651P-201ENST00000411040 105 ntBASIC0.74□□□□□ -2.29
NKX2-6A6NCS4 AC063976.4-201ENST00000421971 163 ntBASIC0.74□□□□□ -2.29
NKX2-6A6NCS4 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.74□□□□□ -2.29
NKX2-6A6NCS4 HMGN2P32-201ENST00000444648 269 ntBASIC0.74□□□□□ -2.29
NKX2-6A6NCS4 AC245047.8-201ENST00000456455 284 ntBASIC0.74□□□□□ -2.29
NKX2-6A6NCS4 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.74□□□□□ -2.29
NKX2-6A6NCS4 RNU6-1338P-201ENST00000516328 91 ntBASIC0.74□□□□□ -2.29
NKX2-6A6NCS4 AC023827.1-201ENST00000569247 97 ntBASIC0.74□□□□□ -2.29
NKX2-6A6NCS4 MIR5692C2-201ENST00000577959 77 ntBASIC0.74□□□□□ -2.29
NKX2-6A6NCS4 FAM71BP1-201ENST00000604431 523 ntBASIC0.74□□□□□ -2.29
NKX2-6A6NCS4 AC015726.2-201ENST00000620112 122 ntBASIC0.74□□□□□ -2.29
NKX2-6A6NCS4 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.74□□□□□ -2.29
NKX2-6A6NCS4 RNA5SP264-201ENST00000363115 107 ntBASIC0.73□□□□□ -2.29
NKX2-6A6NCS4 Y_RNA.152-201ENST00000363578 100 ntBASIC0.73□□□□□ -2.29
NKX2-6A6NCS4 RNU6-326P-201ENST00000365480 107 ntBASIC0.73□□□□□ -2.29
NKX2-6A6NCS4 RNU6-514P-201ENST00000384208 107 ntBASIC0.73□□□□□ -2.29
NKX2-6A6NCS4 MIR1185-1-201ENST00000408598 86 ntBASIC0.73□□□□□ -2.29
NKX2-6A6NCS4 RNU7-21P-201ENST00000459430 62 ntBASIC0.73□□□□□ -2.29
NKX2-6A6NCS4 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.73□□□□□ -2.29
NKX2-6A6NCS4 RN7SKP164-201ENST00000516138 266 ntBASIC0.73□□□□□ -2.29
NKX2-6A6NCS4 SNORA27.4-201ENST00000516650 95 ntBASIC0.73□□□□□ -2.29
NKX2-6A6NCS4 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.73□□□□□ -2.29
NKX2-6A6NCS4 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.73□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 165.4 ms