Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MIR3670-3-201ENST00000584855 65 ntBASIC2.48□□□□□ -2.01
PTCHD1Q96NR3 MIR3670-4-201ENST00000612260 65 ntBASIC2.48□□□□□ -2.01
PTCHD1Q96NR3 MIR6852-201ENST00000621699 66 ntBASIC2.48□□□□□ -2.01
PTCHD1Q96NR3 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.48□□□□□ -2.01
PTCHD1Q96NR3 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
PTCHD1Q96NR3 Y_RNA.37-201ENST00000362606 108 ntBASIC2.47□□□□□ -2.01
PTCHD1Q96NR3 SNORA2.2-201ENST00000365473 135 ntBASIC2.47□□□□□ -2.01
PTCHD1Q96NR3 MIR1283-2-201ENST00000408621 87 ntBASIC2.47□□□□□ -2.01
PTCHD1Q96NR3 AC007064.1-201ENST00000412238 351 ntBASIC2.47□□□□□ -2.01
PTCHD1Q96NR3 AL445646.1-201ENST00000431784 216 ntBASIC2.47□□□□□ -2.01
PTCHD1Q96NR3 UBE2DNL-203ENST00000474922 222 ntBASIC2.47□□□□□ -2.01
PTCHD1Q96NR3 AC114811.1-201ENST00000507207 168 ntBASIC2.47□□□□□ -2.01
PTCHD1Q96NR3 RPL12P50-201ENST00000603116 116 ntBASIC2.47□□□□□ -2.01
PTCHD1Q96NR3 AC006023.1-201ENST00000603944 259 ntBASIC2.47□□□□□ -2.01
PTCHD1Q96NR3 RNU6-163P-201ENST00000384396 106 ntBASIC2.46□□□□□ -2.02
PTCHD1Q96NR3 SNORD116-21-201ENST00000384507 92 ntBASIC2.46□□□□□ -2.02
PTCHD1Q96NR3 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
PTCHD1Q96NR3 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
PTCHD1Q96NR3 MIR1263-201ENST00000408324 86 ntBASIC2.46□□□□□ -2.02
PTCHD1Q96NR3 HMGN2P3-201ENST00000433603 273 ntBASIC2.46□□□□□ -2.02
PTCHD1Q96NR3 HMGN2P5-201ENST00000436882 273 ntBASIC2.46□□□□□ -2.02
PTCHD1Q96NR3 Y_RNA.649-201ENST00000459077 103 ntBASIC2.46□□□□□ -2.02
PTCHD1Q96NR3 RNU6-1116P-201ENST00000517269 99 ntBASIC2.46□□□□□ -2.02
PTCHD1Q96NR3 AC015726.2-201ENST00000620112 122 ntBASIC2.46□□□□□ -2.02
PTCHD1Q96NR3 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.46□□□□□ -2.02
PTCHD1Q96NR3 MTND5P18-201ENST00000445624 1801 ntBASIC2.46□□□□□ -2.02
PTCHD1Q96NR3 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
PTCHD1Q96NR3 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.46□□□□□ -2.02
PTCHD1Q96NR3 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.46□□□□□ -2.02
PTCHD1Q96NR3 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.45□□□□□ -2.02
PTCHD1Q96NR3 SNORA22-201ENST00000383907 134 ntBASIC2.45□□□□□ -2.02
PTCHD1Q96NR3 MIR518A2-201ENST00000384966 87 ntBASIC2.45□□□□□ -2.02
PTCHD1Q96NR3 RNA5SP465-201ENST00000391195 109 ntBASIC2.45□□□□□ -2.02
PTCHD1Q96NR3 RN7SKP200-201ENST00000410564 320 ntBASIC2.45□□□□□ -2.02
PTCHD1Q96NR3 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.45□□□□□ -2.02
PTCHD1Q96NR3 HSPE1P9-201ENST00000440046 311 ntBASIC2.45□□□□□ -2.02
PTCHD1Q96NR3 CYCTP-201ENST00000504253 315 ntBASIC2.45□□□□□ -2.02
PTCHD1Q96NR3 SNORD36C-201ENST00000516733 66 ntBASIC2.45□□□□□ -2.02
PTCHD1Q96NR3 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
PTCHD1Q96NR3 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
PTCHD1Q96NR3 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.44□□□□□ -2.02
PTCHD1Q96NR3 MIRLET7C-201ENST00000362160 84 ntBASIC2.44□□□□□ -2.02
PTCHD1Q96NR3 RNU1-52P-201ENST00000384190 164 ntBASIC2.44□□□□□ -2.02
PTCHD1Q96NR3 MIR524-201ENST00000385242 87 ntBASIC2.44□□□□□ -2.02
PTCHD1Q96NR3 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.44□□□□□ -2.02
PTCHD1Q96NR3 MIR3162-201ENST00000581818 82 ntBASIC2.44□□□□□ -2.02
PTCHD1Q96NR3 AL137067.1-201ENST00000615933 120 ntBASIC2.44□□□□□ -2.02
PTCHD1Q96NR3 UGP2-230ENST00000626380 276 ntTSL 5 BASIC2.44□□□□□ -2.02
PTCHD1Q96NR3 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.44□□□□□ -2.02
PTCHD1Q96NR3 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
PTCHD1Q96NR3 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
PTCHD1Q96NR3 Y_RNA.35-201ENST00000362601 101 ntBASIC2.43□□□□□ -2.02
PTCHD1Q96NR3 SNORA63D-201ENST00000364359 132 ntBASIC2.43□□□□□ -2.02
PTCHD1Q96NR3 RNU6-755P-201ENST00000364400 103 ntBASIC2.43□□□□□ -2.02
PTCHD1Q96NR3 Y_RNA.366-201ENST00000365540 102 ntBASIC2.43□□□□□ -2.02
PTCHD1Q96NR3 SNORD38C-201ENST00000384381 69 ntBASIC2.43□□□□□ -2.02
PTCHD1Q96NR3 RNU6-950P-201ENST00000384651 107 ntBASIC2.43□□□□□ -2.02
PTCHD1Q96NR3 MIR548A1-201ENST00000385041 97 ntBASIC2.43□□□□□ -2.02
PTCHD1Q96NR3 RNA5SP210-201ENST00000391034 120 ntBASIC2.43□□□□□ -2.02
PTCHD1Q96NR3 HMGN2P39-201ENST00000398005 273 ntBASIC2.43□□□□□ -2.02
PTCHD1Q96NR3 AL034345.1-201ENST00000407768 123 ntBASIC2.43□□□□□ -2.02
PTCHD1Q96NR3 AC063976.4-201ENST00000421971 163 ntBASIC2.43□□□□□ -2.02
PTCHD1Q96NR3 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC2.43□□□□□ -2.02
PTCHD1Q96NR3 RPS26P48-201ENST00000491713 339 ntBASIC2.43□□□□□ -2.02
PTCHD1Q96NR3 RNVU1-2-201ENST00000516326 135 ntBASIC2.43□□□□□ -2.02
PTCHD1Q96NR3 RNA5SP282-201ENST00000516355 108 ntBASIC2.43□□□□□ -2.02
PTCHD1Q96NR3 AC027279.3-201ENST00000625055 122 ntBASIC2.43□□□□□ -2.02
PTCHD1Q96NR3 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
PTCHD1Q96NR3 AC131280.1-202ENST00000624067 4211 ntBASIC2.42□□□□□ -2.02
PTCHD1Q96NR3 RNA5SP68-201ENST00000363885 119 ntBASIC2.42□□□□□ -2.02
PTCHD1Q96NR3 Y_RNA.528-201ENST00000384575 108 ntBASIC2.42□□□□□ -2.02
PTCHD1Q96NR3 RNA5SP136-201ENST00000410906 107 ntBASIC2.42□□□□□ -2.02
PTCHD1Q96NR3 RNU6-938P-201ENST00000411285 103 ntBASIC2.42□□□□□ -2.02
PTCHD1Q96NR3 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.42□□□□□ -2.02
PTCHD1Q96NR3 CALM2P4-201ENST00000430810 426 ntBASIC2.42□□□□□ -2.02
PTCHD1Q96NR3 RNU7-70P-201ENST00000516941 66 ntBASIC2.42□□□□□ -2.02
PTCHD1Q96NR3 AP003484.1-201ENST00000530974 250 ntBASIC2.42□□□□□ -2.02
PTCHD1Q96NR3 MIR5194-201ENST00000582634 120 ntBASIC2.42□□□□□ -2.02
PTCHD1Q96NR3 AC010297.1-201ENST00000623948 149 ntBASIC2.42□□□□□ -2.02
PTCHD1Q96NR3 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC2.42□□□□□ -2.02
PTCHD1Q96NR3 ZNF720P1-201ENST00000562403 1939 ntBASIC2.42□□□□□ -2.02
PTCHD1Q96NR3 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
PTCHD1Q96NR3 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.41□□□□□ -2.02
PTCHD1Q96NR3 RNA5SP393-201ENST00000363423 117 ntBASIC2.41□□□□□ -2.02
PTCHD1Q96NR3 SNORA4.2-201ENST00000365313 147 ntBASIC2.41□□□□□ -2.02
PTCHD1Q96NR3 Y_RNA.440-201ENST00000384120 114 ntBASIC2.41□□□□□ -2.02
PTCHD1Q96NR3 RNU6-880P-201ENST00000384526 107 ntBASIC2.41□□□□□ -2.02
PTCHD1Q96NR3 SNORA48.1-201ENST00000390879 135 ntBASIC2.41□□□□□ -2.02
PTCHD1Q96NR3 U8.16-201ENST00000391279 133 ntBASIC2.41□□□□□ -2.02
PTCHD1Q96NR3 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.41□□□□□ -2.02
PTCHD1Q96NR3 AC087499.4-201ENST00000448505 178 ntBASIC2.41□□□□□ -2.02
PTCHD1Q96NR3 RNU6-240P-201ENST00000516098 97 ntBASIC2.41□□□□□ -2.02
PTCHD1Q96NR3 MIR6817-201ENST00000615588 66 ntBASIC2.41□□□□□ -2.02
PTCHD1Q96NR3 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
PTCHD1Q96NR3 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.4□□□□□ -2.02
PTCHD1Q96NR3 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.4□□□□□ -2.03
PTCHD1Q96NR3 SNORA67.1-201ENST00000364749 141 ntBASIC2.4□□□□□ -2.03
PTCHD1Q96NR3 RNA5SP148-201ENST00000516527 94 ntBASIC2.4□□□□□ -2.03
PTCHD1Q96NR3 SNORA18.7-201ENST00000516910 131 ntBASIC2.4□□□□□ -2.03
PTCHD1Q96NR3 MIR4446-201ENST00000578505 67 ntBASIC2.4□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 205.5 ms