Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.1
PTCHD3Q3KNS1 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
PTCHD3Q3KNS1 snoU2-30.1-201ENST00000365012 70 ntBASIC1.9□□□□□ -2.11
PTCHD3Q3KNS1 Y_RNA.336-201ENST00000365307 109 ntBASIC1.9□□□□□ -2.11
PTCHD3Q3KNS1 Y_RNA.432-201ENST00000384087 111 ntBASIC1.9□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-424P-201ENST00000384367 105 ntBASIC1.9□□□□□ -2.11
PTCHD3Q3KNS1 MIR15B-201ENST00000385045 98 ntBASIC1.9□□□□□ -2.11
PTCHD3Q3KNS1 SNORA79-201ENST00000408376 140 ntBASIC1.9□□□□□ -2.11
PTCHD3Q3KNS1 RPL23AP6-201ENST00000446637 472 ntBASIC1.9□□□□□ -2.11
PTCHD3Q3KNS1 MIR4713-201ENST00000582691 75 ntBASIC1.9□□□□□ -2.11
PTCHD3Q3KNS1 Pinc.1-201ENST00000616452 154 ntBASIC1.9□□□□□ -2.11
PTCHD3Q3KNS1 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.9□□□□□ -2.11
PTCHD3Q3KNS1 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-661P-201ENST00000362409 107 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-1084P-201ENST00000362498 107 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 SNORD45.3-201ENST00000363836 72 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 SNORD50B-201ENST00000364995 70 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-484P-201ENST00000384016 107 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 RN7SKP51-201ENST00000410781 304 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-1135P-201ENST00000411083 103 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 PGBD4P5-201ENST00000445958 426 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 RPL23AP42-201ENST00000471152 471 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 CYCTP-201ENST00000504253 315 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-561P-201ENST00000516222 102 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 SNORD45.4-201ENST00000516629 73 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 RNA5SP168-201ENST00000516642 112 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 AC097639.2-201ENST00000603159 172 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 AC021506.2-201ENST00000612354 169 ntBASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
PTCHD3Q3KNS1 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-833P-201ENST00000363486 107 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 RNA5SP99-201ENST00000364020 114 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 Y_RNA.357-201ENST00000365487 109 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 U8.13-201ENST00000390842 128 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 U8.16-201ENST00000391279 133 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 HMGN2P32-201ENST00000444648 269 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 RNU7-34P-201ENST00000459394 64 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 AC099513.1-201ENST00000490423 301 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-197P-201ENST00000516680 100 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-295P-201ENST00000516901 104 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-1212P-201ENST00000517023 104 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 AC120024.3-201ENST00000603167 156 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 uc_338.20-201ENST00000621563 178 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 AC092881.1-201ENST00000638218 2733 ntBASIC1.88□□□□□ -2.11
PTCHD3Q3KNS1 MIR424-201ENST00000362227 98 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 SNORD14E-201ENST00000364009 85 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 RNU4-84P-201ENST00000364200 139 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-442P-201ENST00000383968 104 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 MIR583-201ENST00000384846 75 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 AC019129.1-201ENST00000403786 261 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-394P-201ENST00000410735 107 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 RNU2-40P-201ENST00000410833 196 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 Y_RNA.622-201ENST00000411091 108 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 AC074198.2-201ENST00000508153 258 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 MRPS17P9-201ENST00000511924 393 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-237P-201ENST00000515985 71 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 RNA5SP364-201ENST00000516938 78 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 MIR4299-201ENST00000577899 72 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 AL627230.6-201ENST00000611129 280 ntBASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
PTCHD3Q3KNS1 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-1123P-201ENST00000362347 106 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-643P-201ENST00000384018 107 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-163P-201ENST00000384396 106 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 Y_RNA.486-201ENST00000384398 107 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 MIR676-201ENST00000390702 67 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-239P-201ENST00000390990 99 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 SNORA40.18-201ENST00000391200 128 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 AL445685.2-201ENST00000422551 342 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 CALM2P4-201ENST00000430810 426 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 SEPT7P4-201ENST00000437076 306 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 AC107027.2-201ENST00000512197 115 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 RNU7-121P-201ENST00000516604 62 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-548P-201ENST00000517083 115 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 MIR3935-201ENST00000583472 104 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 AC006441.5-201ENST00000612680 209 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 MIR6845-201ENST00000613182 61 ntBASIC1.86□□□□□ -2.11
PTCHD3Q3KNS1 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-414P-201ENST00000363705 104 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 Y_RNA.634-201ENST00000364811 113 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 MIR194-1-201ENST00000384892 85 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 MIR660-201ENST00000385235 97 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 Y_RNA.580-201ENST00000391004 95 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 MIR891A-201ENST00000401237 79 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 RNU5E-9P-201ENST00000411164 104 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 JTBP1-201ENST00000441314 247 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 AC114811.1-201ENST00000507207 168 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-504P-201ENST00000516568 104 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-365P-201ENST00000517113 106 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 AL096840.1-201ENST00000603287 93 ntBASIC1.85□□□□□ -2.11
PTCHD3Q3KNS1 Y_RNA.337-201ENST00000365312 102 ntBASIC1.84□□□□□ -2.11
PTCHD3Q3KNS1 SNORD24-201ENST00000383884 75 ntBASIC1.84□□□□□ -2.11
PTCHD3Q3KNS1 RNU6-1062P-201ENST00000383908 107 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 329.1 ms