Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 SNORD11-201ENST00000459124 84 ntBASIC2.42□□□□□ -2.02
RTF1Q92541 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.42□□□□□ -2.02
RTF1Q92541 MIR514B-201ENST00000516774 80 ntBASIC2.42□□□□□ -2.02
RTF1Q92541 RPL23AP91-201ENST00000569211 455 ntBASIC2.42□□□□□ -2.02
RTF1Q92541 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.42□□□□□ -2.02
RTF1Q92541 AC021753.1-201ENST00000635724 168 ntBASIC2.42□□□□□ -2.02
RTF1Q92541 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
RTF1Q92541 RNU6-1080P-201ENST00000383982 107 ntBASIC2.41□□□□□ -2.02
RTF1Q92541 RNU6-804P-201ENST00000384286 107 ntBASIC2.41□□□□□ -2.02
RTF1Q92541 MIR15B-201ENST00000385045 98 ntBASIC2.41□□□□□ -2.02
RTF1Q92541 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
RTF1Q92541 HMGN2P38-201ENST00000423806 265 ntBASIC2.41□□□□□ -2.02
RTF1Q92541 AL121914.1-201ENST00000450188 156 ntBASIC2.41□□□□□ -2.02
RTF1Q92541 HMGN1P7-201ENST00000491722 313 ntBASIC2.41□□□□□ -2.02
RTF1Q92541 AC104465.1-201ENST00000611365 139 ntBASIC2.41□□□□□ -2.02
RTF1Q92541 JPX_2.1-201ENST00000614161 69 ntBASIC2.41□□□□□ -2.02
RTF1Q92541 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.41□□□□□ -2.02
RTF1Q92541 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
RTF1Q92541 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.4□□□□□ -2.02
RTF1Q92541 Y_RNA.170-201ENST00000363746 110 ntBASIC2.4□□□□□ -2.03
RTF1Q92541 Y_RNA.253-201ENST00000364562 112 ntBASIC2.4□□□□□ -2.03
RTF1Q92541 RNY1P5-201ENST00000383890 115 ntBASIC2.4□□□□□ -2.03
RTF1Q92541 MIR9-3-201ENST00000385084 90 ntBASIC2.4□□□□□ -2.03
RTF1Q92541 RNU6-239P-201ENST00000390990 99 ntBASIC2.4□□□□□ -2.03
RTF1Q92541 Y_RNA.587-201ENST00000391210 103 ntBASIC2.4□□□□□ -2.03
RTF1Q92541 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.4□□□□□ -2.03
RTF1Q92541 AC107027.2-201ENST00000512197 115 ntBASIC2.4□□□□□ -2.03
RTF1Q92541 AC084364.2-201ENST00000546924 395 ntBASIC2.4□□□□□ -2.03
RTF1Q92541 MIR4448-201ENST00000584360 86 ntBASIC2.4□□□□□ -2.03
RTF1Q92541 AC022217.4-201ENST00000604389 163 ntBASIC2.4□□□□□ -2.03
RTF1Q92541 uc_338.4-201ENST00000616635 176 ntBASIC2.4□□□□□ -2.03
RTF1Q92541 SNORA1B-201ENST00000362535 133 ntBASIC2.39□□□□□ -2.03
RTF1Q92541 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
RTF1Q92541 SNORA48.1-201ENST00000390879 135 ntBASIC2.39□□□□□ -2.03
RTF1Q92541 RPS27P1-201ENST00000450552 247 ntBASIC2.39□□□□□ -2.03
RTF1Q92541 SNORD77.4-201ENST00000516158 81 ntBASIC2.39□□□□□ -2.03
RTF1Q92541 RNU7-121P-201ENST00000516604 62 ntBASIC2.39□□□□□ -2.03
RTF1Q92541 Y_RNA.703-201ENST00000516846 111 ntBASIC2.39□□□□□ -2.03
RTF1Q92541 MIR5094-201ENST00000578766 85 ntBASIC2.39□□□□□ -2.03
RTF1Q92541 AL049861.1-201ENST00000603130 150 ntBASIC2.39□□□□□ -2.03
RTF1Q92541 AC084768.2-201ENST00000622736 221 ntBASIC2.39□□□□□ -2.03
RTF1Q92541 MTND1P7-201ENST00000632801 297 ntBASIC2.39□□□□□ -2.03
RTF1Q92541 AL359851.1-201ENST00000569460 4997 ntBASIC2.39□□□□□ -2.03
RTF1Q92541 RNU6-643P-201ENST00000384018 107 ntBASIC2.38□□□□□ -2.03
RTF1Q92541 Y_RNA.506-201ENST00000384494 102 ntBASIC2.38□□□□□ -2.03
RTF1Q92541 AC245047.3-201ENST00000429428 127 ntBASIC2.38□□□□□ -2.03
RTF1Q92541 AC245047.4-201ENST00000433189 144 ntBASIC2.38□□□□□ -2.03
RTF1Q92541 AL049830.1-201ENST00000468034 425 ntBASIC2.38□□□□□ -2.03
RTF1Q92541 RNU7-200P-201ENST00000516105 62 ntBASIC2.38□□□□□ -2.03
RTF1Q92541 RNU6-561P-201ENST00000516222 102 ntBASIC2.38□□□□□ -2.03
RTF1Q92541 RNU6-126P-201ENST00000516685 103 ntBASIC2.38□□□□□ -2.03
RTF1Q92541 RNU2-56P-201ENST00000516826 190 ntBASIC2.38□□□□□ -2.03
RTF1Q92541 SNORA31.25-201ENST00000517242 134 ntBASIC2.38□□□□□ -2.03
RTF1Q92541 AL160236.1-201ENST00000556317 195 ntBASIC2.38□□□□□ -2.03
RTF1Q92541 SNORD45.3-201ENST00000363836 72 ntBASIC2.37□□□□□ -2.03
RTF1Q92541 Y_RNA.398-201ENST00000383952 99 ntBASIC2.37□□□□□ -2.03
RTF1Q92541 MIR17-201ENST00000385012 84 ntBASIC2.37□□□□□ -2.03
RTF1Q92541 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
RTF1Q92541 SNORA79-201ENST00000408376 140 ntBASIC2.37□□□□□ -2.03
RTF1Q92541 SNRPGP10-201ENST00000432323 225 ntBASIC2.37□□□□□ -2.03
RTF1Q92541 MTND2P29-201ENST00000438595 412 ntBASIC2.37□□□□□ -2.03
RTF1Q92541 AL392103.1-201ENST00000447000 198 ntBASIC2.37□□□□□ -2.03
RTF1Q92541 SNRPGP8-201ENST00000454064 226 ntBASIC2.37□□□□□ -2.03
RTF1Q92541 RPS29P11-201ENST00000496507 171 ntBASIC2.37□□□□□ -2.03
RTF1Q92541 RNU7-28P-201ENST00000516759 62 ntBASIC2.37□□□□□ -2.03
RTF1Q92541 RNA5SP364-201ENST00000516938 78 ntBASIC2.37□□□□□ -2.03
RTF1Q92541 MIR4529-201ENST00000578110 78 ntBASIC2.37□□□□□ -2.03
RTF1Q92541 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.37□□□□□ -2.03
RTF1Q92541 AC087685.1-201ENST00000587507 141 ntBASIC2.37□□□□□ -2.03
RTF1Q92541 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.36□□□□□ -2.03
RTF1Q92541 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
RTF1Q92541 Y_RNA.8-201ENST00000362353 102 ntBASIC2.36□□□□□ -2.03
RTF1Q92541 SNORA63D-201ENST00000364359 132 ntBASIC2.36□□□□□ -2.03
RTF1Q92541 RNU6-1138P-201ENST00000365359 106 ntBASIC2.36□□□□□ -2.03
RTF1Q92541 RNU6-449P-201ENST00000383914 107 ntBASIC2.36□□□□□ -2.03
RTF1Q92541 RNU6-125P-201ENST00000384505 107 ntBASIC2.36□□□□□ -2.03
RTF1Q92541 AL606517.2-201ENST00000442855 241 ntBASIC2.36□□□□□ -2.03
RTF1Q92541 RNU7-193P-201ENST00000516723 65 ntBASIC2.36□□□□□ -2.03
RTF1Q92541 Y_RNA.714-201ENST00000517065 90 ntBASIC2.36□□□□□ -2.03
RTF1Q92541 MTND5P41-201ENST00000517498 206 ntBASIC2.36□□□□□ -2.03
RTF1Q92541 MIR4662B-201ENST00000579498 81 ntBASIC2.36□□□□□ -2.03
RTF1Q92541 U1.36-201ENST00000620684 176 ntBASIC2.36□□□□□ -2.03
RTF1Q92541 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
RTF1Q92541 RNU1-17P-201ENST00000363022 152 ntBASIC2.35□□□□□ -2.03
RTF1Q92541 SNORA16.1-201ENST00000364597 132 ntBASIC2.35□□□□□ -2.03
RTF1Q92541 Y_RNA.337-201ENST00000365312 102 ntBASIC2.35□□□□□ -2.03
RTF1Q92541 RNU6-484P-201ENST00000384016 107 ntBASIC2.35□□□□□ -2.03
RTF1Q92541 Y_RNA.432-201ENST00000384087 111 ntBASIC2.35□□□□□ -2.03
RTF1Q92541 RNA5SP109-201ENST00000391010 116 ntBASIC2.35□□□□□ -2.03
RTF1Q92541 Y_RNA.622-201ENST00000411091 108 ntBASIC2.35□□□□□ -2.03
RTF1Q92541 AL356379.1-201ENST00000414105 126 ntBASIC2.35□□□□□ -2.03
RTF1Q92541 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.35□□□□□ -2.03
RTF1Q92541 OR9P1P-201ENST00000496431 281 ntBASIC2.35□□□□□ -2.03
RTF1Q92541 RNU6-1299P-201ENST00000516316 100 ntBASIC2.35□□□□□ -2.03
RTF1Q92541 RNVU1-2-201ENST00000516326 135 ntBASIC2.35□□□□□ -2.03
RTF1Q92541 SNORA25.15-201ENST00000516487 89 ntBASIC2.35□□□□□ -2.03
RTF1Q92541 RNA5SP153-201ENST00000516498 76 ntBASIC2.35□□□□□ -2.03
RTF1Q92541 SUB1P4-201ENST00000566062 339 ntBASIC2.35□□□□□ -2.03
RTF1Q92541 MIR3133-201ENST00000583157 78 ntBASIC2.35□□□□□ -2.03
RTF1Q92541 MIR3935-201ENST00000583472 104 ntBASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 204.1 ms