Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC002076.2-201ENST00000617362 122 ntBASIC3.65□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 Y_RNA.10-201ENST00000362371 110 ntBASIC3.64□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 Y_RNA.178-201ENST00000363832 102 ntBASIC3.64□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 RNU6-1296P-201ENST00000383879 107 ntBASIC3.64□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 Y_RNA.410-201ENST00000383992 113 ntBASIC3.64□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 MT-TI-201ENST00000387365 69 ntBASIC3.64□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 AC010099.1-201ENST00000455434 375 ntBASIC3.64□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC3.64□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 RNA5SP148-201ENST00000516527 94 ntBASIC3.64□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 RNU7-70P-201ENST00000516941 66 ntBASIC3.64□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 AC004486.1-201ENST00000546846 233 ntBASIC3.64□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC3.64□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 AL353746.1-201ENST00000566293 6881 ntBASIC3.64□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.64□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.64□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 RNU6-349P-201ENST00000362402 107 ntBASIC3.63□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 RNU6-859P-201ENST00000362728 107 ntBASIC3.63□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 Y_RNA.244-201ENST00000364484 109 ntBASIC3.63□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 SNORA2.2-201ENST00000365473 135 ntBASIC3.63□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 MIR518F-201ENST00000384973 87 ntBASIC3.63□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 MIR27B-201ENST00000385129 97 ntBASIC3.63□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 RNU6-972P-201ENST00000391208 107 ntBASIC3.63□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 Z98742.2-201ENST00000431564 187 ntBASIC3.63□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 Y_RNA.714-201ENST00000517065 90 ntBASIC3.63□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 AP000867.2-201ENST00000532468 320 ntBASIC3.63□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 FAM71BP1-201ENST00000604431 523 ntBASIC3.63□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 AC090115.4-201ENST00000609970 188 ntBASIC3.63□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 ZNF720P1-201ENST00000562403 1939 ntBASIC3.62□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 Y_RNA.253-201ENST00000364562 112 ntBASIC3.62□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 Y_RNA.290-201ENST00000364879 114 ntBASIC3.62□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 RNU6-1276P-201ENST00000365372 104 ntBASIC3.62□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 RNU6-816P-201ENST00000390914 107 ntBASIC3.62□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 RNU6-1268P-201ENST00000391214 107 ntBASIC3.62□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 RNU6-1239P-201ENST00000391310 107 ntBASIC3.62□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 Y_RNA.601-201ENST00000410500 113 ntBASIC3.62□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 RNU7-164P-201ENST00000459221 62 ntBASIC3.62□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 RNU2-13P-201ENST00000515909 113 ntBASIC3.62□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 RNA5SP490-201ENST00000517141 136 ntBASIC3.62□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.62□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.62□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 MIR376A2-201ENST00000636782 80 ntBASIC3.62□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.61□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 SNORA4.2-201ENST00000365313 147 ntBASIC3.61□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 RNU6-1189P-201ENST00000383958 107 ntBASIC3.61□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 RNY1P6-201ENST00000384193 109 ntBASIC3.61□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 AL138827.1-201ENST00000402666 306 ntBASIC3.61□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.61□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 RNU6ATAC12P-201ENST00000516542 115 ntBASIC3.61□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 AC007229.1-201ENST00000590455 412 ntBASIC3.61□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 AL359075.3-201ENST00000613288 217 ntBASIC3.61□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.6□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 RNU6-944P-201ENST00000364023 107 ntBASIC3.6□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.6□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 RNU6-521P-201ENST00000516663 105 ntBASIC3.6□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 AC103810.1-201ENST00000579873 453 ntBASIC3.6□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.59□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.59□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 MIR1253-201ENST00000408273 105 ntBASIC3.59□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 RN7SKP223-201ENST00000410582 62 ntBASIC3.59□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 RN7SL330P-201ENST00000469709 307 ntBASIC3.59□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 AC022217.4-201ENST00000604389 163 ntBASIC3.59□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 MIR6779-201ENST00000617283 64 ntBASIC3.59□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 AC091152.2-201ENST00000591628 2569 ntBASIC3.59□□□□□ -1.83
SENP3-EIF4A1A0A087X0R7 SNORD114-1-201ENST00000362705 72 ntBASIC3.58□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 RNU6-497P-201ENST00000365316 104 ntBASIC3.58□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 RNU6-1274P-201ENST00000384557 107 ntBASIC3.58□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 MIR802-201ENST00000390235 94 ntBASIC3.58□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 RNU6-279P-201ENST00000391297 101 ntBASIC3.58□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 RNU1-131P-201ENST00000458943 161 ntBASIC3.58□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 RNU7-123P-201ENST00000515911 60 ntBASIC3.58□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 RNA5SP112-201ENST00000515937 99 ntBASIC3.58□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 RNA5SP380-201ENST00000517190 98 ntBASIC3.58□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 AC022254.1-201ENST00000567857 235 ntBASIC3.58□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.58□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 ZNF271P-202ENST00000465539 1970 ntBASIC3.58□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 RNA5SP295-201ENST00000362655 121 ntBASIC3.57□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 RNU6-1099P-201ENST00000363533 107 ntBASIC3.57□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 RNU1-133P-201ENST00000364867 167 ntBASIC3.57□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 AC096949.1-201ENST00000412047 152 ntBASIC3.57□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 RPS15AP28-201ENST00000435088 386 ntBASIC3.57□□□□□ -1.84
SENP3-EIF4A1A0A087X0R7 AC233266.1-201ENST00000454518 96 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 169.8 ms