Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL358944.1-201ENST00000528537 144 ntBASIC1.36□□□□□ -2.19
NKX3-1Q99801 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.36□□□□□ -2.19
NKX3-1Q99801 AL512605.2-201ENST00000592972 256 ntBASIC1.36□□□□□ -2.19
NKX3-1Q99801 AC073349.3-201ENST00000617616 186 ntBASIC1.36□□□□□ -2.19
NKX3-1Q99801 MIR548AY-201ENST00000617669 107 ntBASIC1.36□□□□□ -2.19
NKX3-1Q99801 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
NKX3-1Q99801 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
NKX3-1Q99801 SNORD68-201ENST00000363214 84 ntBASIC1.35□□□□□ -2.19
NKX3-1Q99801 Y_RNA.253-201ENST00000364562 112 ntBASIC1.35□□□□□ -2.19
NKX3-1Q99801 MIR562-201ENST00000384894 95 ntBASIC1.35□□□□□ -2.19
NKX3-1Q99801 RNA5SP482-201ENST00000391269 118 ntBASIC1.35□□□□□ -2.19
NKX3-1Q99801 MIR1302-6-201ENST00000408466 90 ntBASIC1.35□□□□□ -2.19
NKX3-1Q99801 SNORA36B-201ENST00000410438 131 ntBASIC1.35□□□□□ -2.19
NKX3-1Q99801 RNU6-651P-201ENST00000411040 105 ntBASIC1.35□□□□□ -2.19
NKX3-1Q99801 MLLT10P1-201ENST00000418346 262 ntBASIC1.35□□□□□ -2.19
NKX3-1Q99801 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.35□□□□□ -2.19
NKX3-1Q99801 RPL23AP54-201ENST00000495129 419 ntBASIC1.35□□□□□ -2.19
NKX3-1Q99801 SNORA27.4-201ENST00000516650 95 ntBASIC1.35□□□□□ -2.19
NKX3-1Q99801 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.35□□□□□ -2.19
NKX3-1Q99801 AC127455.1-201ENST00000565496 145 ntBASIC1.35□□□□□ -2.19
NKX3-1Q99801 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.35□□□□□ -2.19
NKX3-1Q99801 AL162424.1-201ENST00000602325 221 ntBASIC1.35□□□□□ -2.19
NKX3-1Q99801 SNORA28-201ENST00000606769 126 ntBASIC1.35□□□□□ -2.19
NKX3-1Q99801 SNORD3E-202ENST00000627253 216 ntBASIC1.35□□□□□ -2.19
NKX3-1Q99801 snoU18.1-201ENST00000629629 71 ntBASIC1.35□□□□□ -2.19
NKX3-1Q99801 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.34□□□□□ -2.19
NKX3-1Q99801 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.34□□□□□ -2.19
NKX3-1Q99801 AL391987.6-201ENST00000305671 199 ntBASIC1.34□□□□□ -2.19
NKX3-1Q99801 Y_RNA.117-201ENST00000363294 101 ntBASIC1.34□□□□□ -2.19
NKX3-1Q99801 Y_RNA.149-201ENST00000363558 117 ntBASIC1.34□□□□□ -2.19
NKX3-1Q99801 RNU6-457P-201ENST00000363999 107 ntBASIC1.34□□□□□ -2.19
NKX3-1Q99801 Y_RNA.217-201ENST00000364214 105 ntBASIC1.34□□□□□ -2.19
NKX3-1Q99801 Y_RNA.338-201ENST00000365320 114 ntBASIC1.34□□□□□ -2.19
NKX3-1Q99801 RNA5SP259-201ENST00000365541 109 ntBASIC1.34□□□□□ -2.19
NKX3-1Q99801 MIR513A1-201ENST00000385138 129 ntBASIC1.34□□□□□ -2.19
NKX3-1Q99801 RNU6-1248P-201ENST00000391096 64 ntBASIC1.34□□□□□ -2.19
NKX3-1Q99801 PIGPP3-201ENST00000425307 415 ntBASIC1.34□□□□□ -2.19
NKX3-1Q99801 AC108667.1-201ENST00000428618 249 ntBASIC1.34□□□□□ -2.19
NKX3-1Q99801 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.34□□□□□ -2.19
NKX3-1Q99801 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.34□□□□□ -2.19
NKX3-1Q99801 Y_RNA.641-201ENST00000459414 105 ntBASIC1.34□□□□□ -2.19
NKX3-1Q99801 AC023790.1-201ENST00000482174 347 ntBASIC1.34□□□□□ -2.19
NKX3-1Q99801 MTCO2P24-201ENST00000515611 426 ntBASIC1.34□□□□□ -2.19
NKX3-1Q99801 RNU7-28P-201ENST00000516759 62 ntBASIC1.34□□□□□ -2.19
NKX3-1Q99801 SNORD53B-201ENST00000577887 78 ntBASIC1.34□□□□□ -2.19
NKX3-1Q99801 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.34□□□□□ -2.19
NKX3-1Q99801 AC005357.1-201ENST00000588399 301 ntBASIC1.34□□□□□ -2.19
NKX3-1Q99801 AC106754.2-201ENST00000623006 233 ntBASIC1.34□□□□□ -2.19
NKX3-1Q99801 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.33□□□□□ -2.2
NKX3-1Q99801 RNU6-1123P-201ENST00000362347 106 ntBASIC1.33□□□□□ -2.2
NKX3-1Q99801 RNU6-1272P-201ENST00000362776 107 ntBASIC1.33□□□□□ -2.2
NKX3-1Q99801 Y_RNA.203-201ENST00000364106 102 ntBASIC1.33□□□□□ -2.2
NKX3-1Q99801 RNU6-574P-201ENST00000384265 107 ntBASIC1.33□□□□□ -2.2
NKX3-1Q99801 MIR522-201ENST00000385071 87 ntBASIC1.33□□□□□ -2.2
NKX3-1Q99801 MIR660-201ENST00000385235 97 ntBASIC1.33□□□□□ -2.2
NKX3-1Q99801 MIR1304-201ENST00000408243 91 ntBASIC1.33□□□□□ -2.2
NKX3-1Q99801 RN7SKP51-201ENST00000410781 304 ntBASIC1.33□□□□□ -2.2
NKX3-1Q99801 BTF3P11-201ENST00000426582 477 ntBASIC1.33□□□□□ -2.2
NKX3-1Q99801 MTCYBP9-201ENST00000431021 303 ntBASIC1.33□□□□□ -2.2
NKX3-1Q99801 RNU1-98P-201ENST00000458992 160 ntBASIC1.33□□□□□ -2.2
NKX3-1Q99801 RNA5SP61-201ENST00000516453 100 ntBASIC1.33□□□□□ -2.2
NKX3-1Q99801 RNU7-116P-201ENST00000516940 62 ntBASIC1.33□□□□□ -2.2
NKX3-1Q99801 AC019176.1-201ENST00000518519 225 ntBASIC1.33□□□□□ -2.2
NKX3-1Q99801 AP000942.3-201ENST00000603702 160 ntBASIC1.33□□□□□ -2.2
NKX3-1Q99801 AL008718.3-201ENST00000610217 321 ntBASIC1.33□□□□□ -2.2
NKX3-1Q99801 AL513423.1-201ENST00000621695 132 ntBASIC1.33□□□□□ -2.2
NKX3-1Q99801 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.33□□□□□ -2.2
NKX3-1Q99801 RNU6-740P-201ENST00000364734 105 ntBASIC1.32□□□□□ -2.2
NKX3-1Q99801 RNU6-514P-201ENST00000384208 107 ntBASIC1.32□□□□□ -2.2
NKX3-1Q99801 AC114811.1-201ENST00000507207 168 ntBASIC1.32□□□□□ -2.2
NKX3-1Q99801 RNU7-12P-201ENST00000516030 62 ntBASIC1.32□□□□□ -2.2
NKX3-1Q99801 RNU6-970P-201ENST00000516312 107 ntBASIC1.32□□□□□ -2.2
NKX3-1Q99801 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.32□□□□□ -2.2
NKX3-1Q99801 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.32□□□□□ -2.2
NKX3-1Q99801 AC012433.1-201ENST00000588916 398 ntBASIC1.32□□□□□ -2.2
NKX3-1Q99801 AC037487.3-201ENST00000606668 112 ntBASIC1.32□□□□□ -2.2
NKX3-1Q99801 AL365434.2-201ENST00000607979 234 ntBASIC1.32□□□□□ -2.2
NKX3-1Q99801 RNU6-1209P-201ENST00000363655 107 ntBASIC1.31□□□□□ -2.2
NKX3-1Q99801 RNU6-899P-201ENST00000363947 107 ntBASIC1.31□□□□□ -2.2
NKX3-1Q99801 RNU6-1289P-201ENST00000384431 106 ntBASIC1.31□□□□□ -2.2
NKX3-1Q99801 RNU1-78P-201ENST00000391248 165 ntBASIC1.31□□□□□ -2.2
NKX3-1Q99801 RNU6-383P-201ENST00000410864 94 ntBASIC1.31□□□□□ -2.2
NKX3-1Q99801 SNRPGP10-201ENST00000432323 225 ntBASIC1.31□□□□□ -2.2
NKX3-1Q99801 MTND3P2-201ENST00000438452 342 ntBASIC1.31□□□□□ -2.2
NKX3-1Q99801 HMGN1P7-201ENST00000491722 313 ntBASIC1.31□□□□□ -2.2
NKX3-1Q99801 AC108729.3-201ENST00000513484 108 ntBASIC1.31□□□□□ -2.2
NKX3-1Q99801 MIR4643-201ENST00000577473 78 ntBASIC1.31□□□□□ -2.2
NKX3-1Q99801 MIR3683-201ENST00000580847 82 ntBASIC1.31□□□□□ -2.2
NKX3-1Q99801 BX248123.2-201ENST00000606318 124 ntBASIC1.31□□□□□ -2.2
NKX3-1Q99801 AL078604.3-201ENST00000615580 211 ntBASIC1.31□□□□□ -2.2
NKX3-1Q99801 AC013791.1-201ENST00000616619 62 ntBASIC1.31□□□□□ -2.2
NKX3-1Q99801 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.3□□□□□ -2.2
NKX3-1Q99801 UBE2WP1-201ENST00000362030 340 ntBASIC1.3□□□□□ -2.2
NKX3-1Q99801 MIR378A-201ENST00000362177 66 ntBASIC1.3□□□□□ -2.2
NKX3-1Q99801 Y_RNA.796-201ENST00000364268 102 ntBASIC1.3□□□□□ -2.2
NKX3-1Q99801 RNU4-10P-201ENST00000364383 140 ntBASIC1.3□□□□□ -2.2
NKX3-1Q99801 Y_RNA.275-201ENST00000364726 110 ntBASIC1.3□□□□□ -2.2
NKX3-1Q99801 Y_RNA.799-201ENST00000364992 102 ntBASIC1.3□□□□□ -2.2
NKX3-1Q99801 SNORD50B-201ENST00000364995 70 ntBASIC1.3□□□□□ -2.2
NKX3-1Q99801 RNU2-38P-201ENST00000410856 79 ntBASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 183.4 ms