Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CALM2P4-201ENST00000430810 426 ntBASIC1.41□□□□□ -2.18
NKX3-1Q99801 Z98949.2-201ENST00000440996 144 ntBASIC1.41□□□□□ -2.18
NKX3-1Q99801 SNORD13-201ENST00000459299 104 ntBASIC1.41□□□□□ -2.18
NKX3-1Q99801 OR9P1P-201ENST00000496431 281 ntBASIC1.41□□□□□ -2.18
NKX3-1Q99801 RNU6-1143P-201ENST00000516125 104 ntBASIC1.41□□□□□ -2.18
NKX3-1Q99801 RNU2-56P-201ENST00000516826 190 ntBASIC1.41□□□□□ -2.18
NKX3-1Q99801 DEFB108E-201ENST00000524692 240 ntBASIC1.41□□□□□ -2.18
NKX3-1Q99801 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.41□□□□□ -2.18
NKX3-1Q99801 Y_RNA.47-201ENST00000362697 108 ntBASIC1.4□□□□□ -2.19
NKX3-1Q99801 Y_RNA.265-201ENST00000364677 108 ntBASIC1.4□□□□□ -2.19
NKX3-1Q99801 Y_RNA.456-201ENST00000384232 111 ntBASIC1.4□□□□□ -2.19
NKX3-1Q99801 Y_RNA.483-201ENST00000384380 101 ntBASIC1.4□□□□□ -2.19
NKX3-1Q99801 MIR568-201ENST00000385036 95 ntBASIC1.4□□□□□ -2.19
NKX3-1Q99801 MIR520G-201ENST00000385064 90 ntBASIC1.4□□□□□ -2.19
NKX3-1Q99801 MIR30A-201ENST00000385092 71 ntBASIC1.4□□□□□ -2.19
NKX3-1Q99801 AC004965.1-201ENST00000413033 213 ntBASIC1.4□□□□□ -2.19
NKX3-1Q99801 AC024067.1-201ENST00000426199 223 ntBASIC1.4□□□□□ -2.19
NKX3-1Q99801 AC104332.1-201ENST00000440471 797 ntBASIC1.4□□□□□ -2.19
NKX3-1Q99801 U8.19-201ENST00000459095 133 ntBASIC1.4□□□□□ -2.19
NKX3-1Q99801 AL049830.1-201ENST00000468034 425 ntBASIC1.4□□□□□ -2.19
NKX3-1Q99801 RNU6-1338P-201ENST00000516328 91 ntBASIC1.4□□□□□ -2.19
NKX3-1Q99801 RNU2-31P-201ENST00000516954 155 ntBASIC1.4□□□□□ -2.19
NKX3-1Q99801 RNU6-1116P-201ENST00000517269 99 ntBASIC1.4□□□□□ -2.19
NKX3-1Q99801 AC136628.3-201ENST00000521868 290 ntBASIC1.4□□□□□ -2.19
NKX3-1Q99801 AP002004.2-201ENST00000531656 154 ntBASIC1.4□□□□□ -2.19
NKX3-1Q99801 MIR4285-201ENST00000581001 85 ntBASIC1.4□□□□□ -2.19
NKX3-1Q99801 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.4□□□□□ -2.19
NKX3-1Q99801 POLR3GP1-201ENST00000594073 261 ntBASIC1.4□□□□□ -2.19
NKX3-1Q99801 PRR13P7-201ENST00000605538 430 ntBASIC1.4□□□□□ -2.19
NKX3-1Q99801 AP001282.2-201ENST00000616149 309 ntBASIC1.4□□□□□ -2.19
NKX3-1Q99801 MIR8062-201ENST00000621515 85 ntBASIC1.4□□□□□ -2.19
NKX3-1Q99801 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.4□□□□□ -2.19
NKX3-1Q99801 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
NKX3-1Q99801 Y_RNA.133-201ENST00000363428 110 ntBASIC1.39□□□□□ -2.19
NKX3-1Q99801 RNU6-662P-201ENST00000384253 104 ntBASIC1.39□□□□□ -2.19
NKX3-1Q99801 RNU6-997P-201ENST00000384725 107 ntBASIC1.39□□□□□ -2.19
NKX3-1Q99801 RNU6-763P-201ENST00000390865 106 ntBASIC1.39□□□□□ -2.19
NKX3-1Q99801 U8.16-201ENST00000391279 133 ntBASIC1.39□□□□□ -2.19
NKX3-1Q99801 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1.39□□□□□ -2.19
NKX3-1Q99801 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.39□□□□□ -2.19
NKX3-1Q99801 RNU7-141P-201ENST00000459304 62 ntBASIC1.39□□□□□ -2.19
NKX3-1Q99801 Y_RNA.637-201ENST00000459424 114 ntBASIC1.39□□□□□ -2.19
NKX3-1Q99801 AC091959.1-201ENST00000495857 238 ntBASIC1.39□□□□□ -2.19
NKX3-1Q99801 RNA5SP168-201ENST00000516642 112 ntBASIC1.39□□□□□ -2.19
NKX3-1Q99801 SUMO2P16-201ENST00000519475 264 ntBASIC1.39□□□□□ -2.19
NKX3-1Q99801 AC024405.2-202ENST00000532731 184 ntBASIC1.39□□□□□ -2.19
NKX3-1Q99801 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.39□□□□□ -2.19
NKX3-1Q99801 AP000648.3-201ENST00000623539 4507 ntBASIC1.38□□□□□ -2.19
NKX3-1Q99801 MIR126-201ENST00000362291 85 ntBASIC1.38□□□□□ -2.19
NKX3-1Q99801 Y_RNA.237-201ENST00000364439 102 ntBASIC1.38□□□□□ -2.19
NKX3-1Q99801 RNU6-326P-201ENST00000365480 107 ntBASIC1.38□□□□□ -2.19
NKX3-1Q99801 Y_RNA.396-201ENST00000383949 103 ntBASIC1.38□□□□□ -2.19
NKX3-1Q99801 RNU6-1323P-201ENST00000384025 107 ntBASIC1.38□□□□□ -2.19
NKX3-1Q99801 SNORA72.4-201ENST00000384174 132 ntBASIC1.38□□□□□ -2.19
NKX3-1Q99801 RNU6-472P-201ENST00000384299 107 ntBASIC1.38□□□□□ -2.19
NKX3-1Q99801 AL034345.1-201ENST00000407768 123 ntBASIC1.38□□□□□ -2.19
NKX3-1Q99801 MIR1323-201ENST00000408090 73 ntBASIC1.38□□□□□ -2.19
NKX3-1Q99801 snoU13.9-201ENST00000458927 103 ntBASIC1.38□□□□□ -2.19
NKX3-1Q99801 TRBVB-201ENST00000477100 408 ntBASIC1.38□□□□□ -2.19
NKX3-1Q99801 RNU6-1045P-201ENST00000516321 107 ntBASIC1.38□□□□□ -2.19
NKX3-1Q99801 RNU7-115P-201ENST00000516433 55 ntBASIC1.38□□□□□ -2.19
NKX3-1Q99801 AL161670.1-201ENST00000554348 137 ntBASIC1.38□□□□□ -2.19
NKX3-1Q99801 AP003357.1-201ENST00000604497 148 ntBASIC1.38□□□□□ -2.19
NKX3-1Q99801 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.38□□□□□ -2.19
NKX3-1Q99801 AL591926.4-201ENST00000616895 298 ntBASIC1.38□□□□□ -2.19
NKX3-1Q99801 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
NKX3-1Q99801 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
NKX3-1Q99801 MIRLET7C-201ENST00000362160 84 ntBASIC1.37□□□□□ -2.19
NKX3-1Q99801 MIR302D-201ENST00000362275 68 ntBASIC1.37□□□□□ -2.19
NKX3-1Q99801 Y_RNA.176-201ENST00000363815 109 ntBASIC1.37□□□□□ -2.19
NKX3-1Q99801 RNU6-338P-201ENST00000383888 105 ntBASIC1.37□□□□□ -2.19
NKX3-1Q99801 SNORA72-201ENST00000384339 132 ntBASIC1.37□□□□□ -2.19
NKX3-1Q99801 RNU6-950P-201ENST00000384651 107 ntBASIC1.37□□□□□ -2.19
NKX3-1Q99801 RNU6-713P-201ENST00000384761 107 ntBASIC1.37□□□□□ -2.19
NKX3-1Q99801 MTCO2P33-201ENST00000402100 465 ntBASIC1.37□□□□□ -2.19
NKX3-1Q99801 MIR1278-201ENST00000408753 81 ntBASIC1.37□□□□□ -2.19
NKX3-1Q99801 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.37□□□□□ -2.19
NKX3-1Q99801 FTH1P12-201ENST00000432137 551 ntBASIC1.37□□□□□ -2.19
NKX3-1Q99801 PGBD4P5-201ENST00000445958 426 ntBASIC1.37□□□□□ -2.19
NKX3-1Q99801 HSPE1P24-201ENST00000450782 238 ntBASIC1.37□□□□□ -2.19
NKX3-1Q99801 AC093850.1-201ENST00000454121 251 ntBASIC1.37□□□□□ -2.19
NKX3-1Q99801 SERF1AP1-201ENST00000514575 187 ntBASIC1.37□□□□□ -2.19
NKX3-1Q99801 RNU6-250P-201ENST00000516958 103 ntBASIC1.37□□□□□ -2.19
NKX3-1Q99801 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.37□□□□□ -2.19
NKX3-1Q99801 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.37□□□□□ -2.19
NKX3-1Q99801 MIR4778-201ENST00000577635 80 ntBASIC1.37□□□□□ -2.19
NKX3-1Q99801 AC015688.6-201ENST00000577737 104 ntBASIC1.37□□□□□ -2.19
NKX3-1Q99801 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.37□□□□□ -2.19
NKX3-1Q99801 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.37□□□□□ -2.19
NKX3-1Q99801 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
NKX3-1Q99801 MIR8063-201ENST00000621930 81 ntBASIC1.37□□□□□ -2.19
NKX3-1Q99801 ICE2P2-201ENST00000483823 2787 ntBASIC1.36□□□□□ -2.19
NKX3-1Q99801 SNORA25.1-201ENST00000362326 128 ntBASIC1.36□□□□□ -2.19
NKX3-1Q99801 SNORD1A-201ENST00000364968 72 ntBASIC1.36□□□□□ -2.19
NKX3-1Q99801 Y_RNA.461-201ENST00000384263 103 ntBASIC1.36□□□□□ -2.19
NKX3-1Q99801 RNU6-424P-201ENST00000384367 105 ntBASIC1.36□□□□□ -2.19
NKX3-1Q99801 MIR320A-201ENST00000385302 82 ntBASIC1.36□□□□□ -2.19
NKX3-1Q99801 SNORA53-201ENST00000391141 249 ntBASIC1.36□□□□□ -2.19
NKX3-1Q99801 RNU11-5P-201ENST00000391216 129 ntBASIC1.36□□□□□ -2.19
NKX3-1Q99801 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.36□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 172.1 ms