Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
PCDHGA3Q9Y5H0 SNORA33-201ENST00000363664 130 ntBASIC2.31□□□□□ -2.04
PCDHGA3Q9Y5H0 SNORA63D-201ENST00000364359 132 ntBASIC2.31□□□□□ -2.04
PCDHGA3Q9Y5H0 Y_RNA.292-201ENST00000364904 97 ntBASIC2.31□□□□□ -2.04
PCDHGA3Q9Y5H0 RNU6-338P-201ENST00000383888 105 ntBASIC2.31□□□□□ -2.04
PCDHGA3Q9Y5H0 SNORA6-201ENST00000384033 151 ntBASIC2.31□□□□□ -2.04
PCDHGA3Q9Y5H0 SNORA36B-201ENST00000410438 131 ntBASIC2.31□□□□□ -2.04
PCDHGA3Q9Y5H0 AC245047.4-201ENST00000433189 144 ntBASIC2.31□□□□□ -2.04
PCDHGA3Q9Y5H0 RPS4XP11-201ENST00000446897 772 ntBASIC2.31□□□□□ -2.04
PCDHGA3Q9Y5H0 AC091021.1-201ENST00000468051 388 ntBASIC2.31□□□□□ -2.04
PCDHGA3Q9Y5H0 AC117454.1-201ENST00000491120 168 ntBASIC2.31□□□□□ -2.04
PCDHGA3Q9Y5H0 AC011604.1-201ENST00000545978 196 ntBASIC2.31□□□□□ -2.04
PCDHGA3Q9Y5H0 MIR6840-201ENST00000611937 71 ntBASIC2.31□□□□□ -2.04
PCDHGA3Q9Y5H0 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.31□□□□□ -2.04
PCDHGA3Q9Y5H0 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
PCDHGA3Q9Y5H0 Y_RNA.257-201ENST00000364596 102 ntBASIC2.3□□□□□ -2.04
PCDHGA3Q9Y5H0 Y_RNA.262-201ENST00000364641 102 ntBASIC2.3□□□□□ -2.04
PCDHGA3Q9Y5H0 Y_RNA.304-201ENST00000365011 112 ntBASIC2.3□□□□□ -2.04
PCDHGA3Q9Y5H0 RPL23AP54-201ENST00000495129 419 ntBASIC2.3□□□□□ -2.04
PCDHGA3Q9Y5H0 RNU6-794P-201ENST00000517261 64 ntBASIC2.3□□□□□ -2.04
PCDHGA3Q9Y5H0 AC021269.2-201ENST00000532318 330 ntBASIC2.3□□□□□ -2.04
PCDHGA3Q9Y5H0 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
PCDHGA3Q9Y5H0 MIR4643-201ENST00000577473 78 ntBASIC2.3□□□□□ -2.04
PCDHGA3Q9Y5H0 SNORA28-201ENST00000606769 126 ntBASIC2.3□□□□□ -2.04
PCDHGA3Q9Y5H0 AL008718.3-201ENST00000610217 321 ntBASIC2.3□□□□□ -2.04
PCDHGA3Q9Y5H0 ZNF702P-202ENST00000434269 1966 ntBASIC2.3□□□□□ -2.04
PCDHGA3Q9Y5H0 RNU6-112P-201ENST00000363599 104 ntBASIC2.29□□□□□ -2.04
PCDHGA3Q9Y5H0 RNU6-674P-201ENST00000363831 107 ntBASIC2.29□□□□□ -2.04
PCDHGA3Q9Y5H0 Y_RNA.269-201ENST00000364685 89 ntBASIC2.29□□□□□ -2.04
PCDHGA3Q9Y5H0 Y_RNA.293-201ENST00000364908 93 ntBASIC2.29□□□□□ -2.04
PCDHGA3Q9Y5H0 RN7SKP200-201ENST00000410564 320 ntBASIC2.29□□□□□ -2.04
PCDHGA3Q9Y5H0 RNU2-14P-201ENST00000411053 191 ntBASIC2.29□□□□□ -2.04
PCDHGA3Q9Y5H0 AC245047.3-201ENST00000429428 127 ntBASIC2.29□□□□□ -2.04
PCDHGA3Q9Y5H0 AC233266.1-201ENST00000454518 96 ntBASIC2.29□□□□□ -2.04
PCDHGA3Q9Y5H0 AC079804.2-201ENST00000490376 200 ntBASIC2.29□□□□□ -2.04
PCDHGA3Q9Y5H0 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.29□□□□□ -2.04
PCDHGA3Q9Y5H0 RNU6-1007P-201ENST00000516586 107 ntBASIC2.29□□□□□ -2.04
PCDHGA3Q9Y5H0 RNU2-56P-201ENST00000516826 190 ntBASIC2.29□□□□□ -2.04
PCDHGA3Q9Y5H0 RNU6-388P-201ENST00000517012 105 ntBASIC2.29□□□□□ -2.04
PCDHGA3Q9Y5H0 RNU6-389P-201ENST00000517048 105 ntBASIC2.29□□□□□ -2.04
PCDHGA3Q9Y5H0 Y_RNA.714-201ENST00000517065 90 ntBASIC2.29□□□□□ -2.04
PCDHGA3Q9Y5H0 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.29□□□□□ -2.04
PCDHGA3Q9Y5H0 AC009779.6-201ENST00000603972 165 ntBASIC2.29□□□□□ -2.04
PCDHGA3Q9Y5H0 AC242852.1-201ENST00000612151 96 ntBASIC2.29□□□□□ -2.04
PCDHGA3Q9Y5H0 AC244015.1-201ENST00000622301 99 ntBASIC2.29□□□□□ -2.04
PCDHGA3Q9Y5H0 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.29□□□□□ -2.04
PCDHGA3Q9Y5H0 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
PCDHGA3Q9Y5H0 AC134026.1-201ENST00000623249 2239 ntBASIC2.28□□□□□ -2.04
PCDHGA3Q9Y5H0 Y_RNA.267-201ENST00000364679 109 ntBASIC2.28□□□□□ -2.04
PCDHGA3Q9Y5H0 RNY4P28-201ENST00000365281 93 ntBASIC2.28□□□□□ -2.04
PCDHGA3Q9Y5H0 MIR526A2-201ENST00000390198 65 ntBASIC2.28□□□□□ -2.04
PCDHGA3Q9Y5H0 RNU6ATAC23P-201ENST00000408448 123 ntBASIC2.28□□□□□ -2.04
PCDHGA3Q9Y5H0 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.28□□□□□ -2.04
PCDHGA3Q9Y5H0 FTH1P12-201ENST00000432137 551 ntBASIC2.28□□□□□ -2.04
PCDHGA3Q9Y5H0 RNU6-437P-201ENST00000459408 95 ntBASIC2.28□□□□□ -2.04
PCDHGA3Q9Y5H0 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC2.28□□□□□ -2.04
PCDHGA3Q9Y5H0 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.28□□□□□ -2.04
PCDHGA3Q9Y5H0 Y_RNA.802-201ENST00000614892 130 ntBASIC2.28□□□□□ -2.04
PCDHGA3Q9Y5H0 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.27□□□□□ -2.05
PCDHGA3Q9Y5H0 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.27□□□□□ -2.05
PCDHGA3Q9Y5H0 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.27□□□□□ -2.05
PCDHGA3Q9Y5H0 AL596028.1-201ENST00000326971 197 ntBASIC2.27□□□□□ -2.05
PCDHGA3Q9Y5H0 Y_RNA.76-201ENST00000362931 109 ntBASIC2.27□□□□□ -2.05
PCDHGA3Q9Y5H0 Y_RNA.200-201ENST00000364018 102 ntBASIC2.27□□□□□ -2.05
PCDHGA3Q9Y5H0 RNU6-1048P-201ENST00000364054 107 ntBASIC2.27□□□□□ -2.05
PCDHGA3Q9Y5H0 SNORA8.3-201ENST00000384679 139 ntBASIC2.27□□□□□ -2.05
PCDHGA3Q9Y5H0 Y_RNA.621-201ENST00000411065 96 ntBASIC2.27□□□□□ -2.05
PCDHGA3Q9Y5H0 RNA5SP57-201ENST00000459463 123 ntBASIC2.27□□□□□ -2.05
PCDHGA3Q9Y5H0 AL049830.1-201ENST00000468034 425 ntBASIC2.27□□□□□ -2.05
PCDHGA3Q9Y5H0 RNA5SP281-201ENST00000516504 135 ntBASIC2.27□□□□□ -2.05
PCDHGA3Q9Y5H0 Y_RNA.700-201ENST00000516806 100 ntBASIC2.27□□□□□ -2.05
PCDHGA3Q9Y5H0 MIR4724-201ENST00000579485 89 ntBASIC2.27□□□□□ -2.05
PCDHGA3Q9Y5H0 MIR4524B-201ENST00000581569 115 ntBASIC2.27□□□□□ -2.05
PCDHGA3Q9Y5H0 AC022217.4-201ENST00000604389 163 ntBASIC2.27□□□□□ -2.05
PCDHGA3Q9Y5H0 AC046143.2-201ENST00000609789 160 ntBASIC2.27□□□□□ -2.05
PCDHGA3Q9Y5H0 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.27□□□□□ -2.05
PCDHGA3Q9Y5H0 AC092881.1-201ENST00000638218 2733 ntBASIC2.27□□□□□ -2.05
PCDHGA3Q9Y5H0 ZNF720P1-201ENST00000562403 1939 ntBASIC2.27□□□□□ -2.05
PCDHGA3Q9Y5H0 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
PCDHGA3Q9Y5H0 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.26□□□□□ -2.05
PCDHGA3Q9Y5H0 MIR367-201ENST00000362299 68 ntBASIC2.26□□□□□ -2.05
PCDHGA3Q9Y5H0 RNA5SP482-201ENST00000391269 118 ntBASIC2.26□□□□□ -2.05
PCDHGA3Q9Y5H0 RNA5SP100-201ENST00000410903 110 ntBASIC2.26□□□□□ -2.05
PCDHGA3Q9Y5H0 RNA5SP59-201ENST00000410922 110 ntBASIC2.26□□□□□ -2.05
PCDHGA3Q9Y5H0 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
PCDHGA3Q9Y5H0 AC023449.1-201ENST00000454464 154 ntBASIC2.26□□□□□ -2.05
PCDHGA3Q9Y5H0 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.26□□□□□ -2.05
PCDHGA3Q9Y5H0 AC026436.1-201ENST00000510537 270 ntBASIC2.26□□□□□ -2.05
PCDHGA3Q9Y5H0 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.26□□□□□ -2.05
PCDHGA3Q9Y5H0 MIR4287-201ENST00000579398 78 ntBASIC2.26□□□□□ -2.05
PCDHGA3Q9Y5H0 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.26□□□□□ -2.05
PCDHGA3Q9Y5H0 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.26□□□□□ -2.05
PCDHGA3Q9Y5H0 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.26□□□□□ -2.05
PCDHGA3Q9Y5H0 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
PCDHGA3Q9Y5H0 Y_RNA.199-201ENST00000364014 102 ntBASIC2.25□□□□□ -2.05
PCDHGA3Q9Y5H0 Y_RNA.203-201ENST00000364106 102 ntBASIC2.25□□□□□ -2.05
PCDHGA3Q9Y5H0 Y_RNA.242-201ENST00000364473 110 ntBASIC2.25□□□□□ -2.05
PCDHGA3Q9Y5H0 RNU6-296P-201ENST00000384608 107 ntBASIC2.25□□□□□ -2.05
PCDHGA3Q9Y5H0 RNU6-360P-201ENST00000390944 104 ntBASIC2.25□□□□□ -2.05
PCDHGA3Q9Y5H0 RNA5SP109-201ENST00000391010 116 ntBASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 180.3 ms