Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 Y_RNA.145-201ENST00000363527 102 ntBASIC1.46□□□□□ -2.18
NKX3-1Q99801 Y_RNA.152-201ENST00000363578 100 ntBASIC1.46□□□□□ -2.18
NKX3-1Q99801 RNU6-1048P-201ENST00000364054 107 ntBASIC1.46□□□□□ -2.18
NKX3-1Q99801 Y_RNA.310-201ENST00000365063 113 ntBASIC1.46□□□□□ -2.18
NKX3-1Q99801 Y_RNA.459-201ENST00000384251 102 ntBASIC1.46□□□□□ -2.18
NKX3-1Q99801 MIR548F4-201ENST00000408515 105 ntBASIC1.46□□□□□ -2.18
NKX3-1Q99801 CYCSP49-201ENST00000420810 319 ntBASIC1.46□□□□□ -2.18
NKX3-1Q99801 AL731563.1-201ENST00000442202 214 ntBASIC1.46□□□□□ -2.18
NKX3-1Q99801 AC233266.1-201ENST00000454518 96 ntBASIC1.46□□□□□ -2.18
NKX3-1Q99801 RPL36AP21-201ENST00000490372 323 ntBASIC1.46□□□□□ -2.18
NKX3-1Q99801 AC099513.1-201ENST00000490423 301 ntBASIC1.46□□□□□ -2.18
NKX3-1Q99801 RNU6-237P-201ENST00000515985 71 ntBASIC1.46□□□□□ -2.18
NKX3-1Q99801 RNA5SP481-201ENST00000516814 122 ntBASIC1.46□□□□□ -2.18
NKX3-1Q99801 RNU6-570P-201ENST00000517051 105 ntBASIC1.46□□□□□ -2.18
NKX3-1Q99801 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.46□□□□□ -2.18
NKX3-1Q99801 AC242852.1-201ENST00000612151 96 ntBASIC1.46□□□□□ -2.18
NKX3-1Q99801 AC244015.1-201ENST00000622301 99 ntBASIC1.46□□□□□ -2.18
NKX3-1Q99801 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.46□□□□□ -2.18
NKX3-1Q99801 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.46□□□□□ -2.18
NKX3-1Q99801 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.46□□□□□ -2.18
NKX3-1Q99801 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.46□□□□□ -2.18
NKX3-1Q99801 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.45□□□□□ -2.18
NKX3-1Q99801 RNU6-661P-201ENST00000362409 107 ntBASIC1.45□□□□□ -2.18
NKX3-1Q99801 RNU6-1080P-201ENST00000383982 107 ntBASIC1.45□□□□□ -2.18
NKX3-1Q99801 Y_RNA.569-201ENST00000384749 103 ntBASIC1.45□□□□□ -2.18
NKX3-1Q99801 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
NKX3-1Q99801 RNU2-14P-201ENST00000411053 191 ntBASIC1.45□□□□□ -2.18
NKX3-1Q99801 COX6CP10-201ENST00000416832 224 ntBASIC1.45□□□□□ -2.18
NKX3-1Q99801 RNU7-34P-201ENST00000459394 64 ntBASIC1.45□□□□□ -2.18
NKX3-1Q99801 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.45□□□□□ -2.18
NKX3-1Q99801 RNU6-327P-201ENST00000516270 127 ntBASIC1.45□□□□□ -2.18
NKX3-1Q99801 RNU6-341P-201ENST00000516973 96 ntBASIC1.45□□□□□ -2.18
NKX3-1Q99801 SNORA44.1-201ENST00000517031 108 ntBASIC1.45□□□□□ -2.18
NKX3-1Q99801 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.45□□□□□ -2.18
NKX3-1Q99801 AC008269.2-201ENST00000561915 1105 ntBASIC1.45□□□□□ -2.18
NKX3-1Q99801 MIR4709-201ENST00000577272 72 ntBASIC1.45□□□□□ -2.18
NKX3-1Q99801 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.45□□□□□ -2.18
NKX3-1Q99801 AC021506.2-201ENST00000612354 169 ntBASIC1.45□□□□□ -2.18
NKX3-1Q99801 AC100821.1-201ENST00000523153 2479 ntBASIC1.45□□□□□ -2.18
NKX3-1Q99801 RNU4-90P-201ENST00000362773 141 ntBASIC1.44□□□□□ -2.18
NKX3-1Q99801 RNU1-17P-201ENST00000363022 152 ntBASIC1.44□□□□□ -2.18
NKX3-1Q99801 Y_RNA.162-201ENST00000363683 102 ntBASIC1.44□□□□□ -2.18
NKX3-1Q99801 Y_RNA.341-201ENST00000365341 102 ntBASIC1.44□□□□□ -2.18
NKX3-1Q99801 Y_RNA.376-201ENST00000365638 108 ntBASIC1.44□□□□□ -2.18
NKX3-1Q99801 RNU6-1031P-201ENST00000384773 107 ntBASIC1.44□□□□□ -2.18
NKX3-1Q99801 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.44□□□□□ -2.18
NKX3-1Q99801 STAG3L5P-204ENST00000443759 179 ntBASIC1.44□□□□□ -2.18
NKX3-1Q99801 Y_RNA.638-201ENST00000459374 113 ntBASIC1.44□□□□□ -2.18
NKX3-1Q99801 RNU6-191P-201ENST00000516295 94 ntBASIC1.44□□□□□ -2.18
NKX3-1Q99801 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.44□□□□□ -2.18
NKX3-1Q99801 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.44□□□□□ -2.18
NKX3-1Q99801 AC136443.5-201ENST00000603741 370 ntBASIC1.44□□□□□ -2.18
NKX3-1Q99801 MIR8074-201ENST00000615081 81 ntBASIC1.44□□□□□ -2.18
NKX3-1Q99801 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
NKX3-1Q99801 MIR424-201ENST00000362227 98 ntBASIC1.43□□□□□ -2.18
NKX3-1Q99801 RNU6-414P-201ENST00000363705 104 ntBASIC1.43□□□□□ -2.18
NKX3-1Q99801 RNU6-801P-201ENST00000364087 105 ntBASIC1.43□□□□□ -2.18
NKX3-1Q99801 U8.7-201ENST00000364940 136 ntBASIC1.43□□□□□ -2.18
NKX3-1Q99801 Y_RNA.368-201ENST00000365547 113 ntBASIC1.43□□□□□ -2.18
NKX3-1Q99801 MIR194-1-201ENST00000384892 85 ntBASIC1.43□□□□□ -2.18
NKX3-1Q99801 MT-TW-201ENST00000387382 68 ntBASIC1.43□□□□□ -2.18
NKX3-1Q99801 AL161935.2-201ENST00000414627 60 ntBASIC1.43□□□□□ -2.18
NKX3-1Q99801 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.43□□□□□ -2.18
NKX3-1Q99801 MTCO1P5-201ENST00000433573 344 ntBASIC1.43□□□□□ -2.18
NKX3-1Q99801 JTBP1-201ENST00000441314 247 ntBASIC1.43□□□□□ -2.18
NKX3-1Q99801 RNU7-94P-201ENST00000459576 63 ntBASIC1.43□□□□□ -2.18
NKX3-1Q99801 RNA5SP458-201ENST00000516188 119 ntBASIC1.43□□□□□ -2.18
NKX3-1Q99801 SCARNA24.2-201ENST00000516968 130 ntBASIC1.43□□□□□ -2.18
NKX3-1Q99801 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.43□□□□□ -2.18
NKX3-1Q99801 AC005972.2-201ENST00000604690 348 ntBASIC1.43□□□□□ -2.18
NKX3-1Q99801 MIR502-201ENST00000606349 86 ntBASIC1.43□□□□□ -2.18
NKX3-1Q99801 AC068647.2-201ENST00000637380 353 ntBASIC1.43□□□□□ -2.18
NKX3-1Q99801 AC134026.1-201ENST00000623249 2239 ntBASIC1.43□□□□□ -2.18
NKX3-1Q99801 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.43□□□□□ -2.18
NKX3-1Q99801 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
NKX3-1Q99801 Y_RNA.136-201ENST00000363444 102 ntBASIC1.42□□□□□ -2.18
NKX3-1Q99801 RNU4-13P-201ENST00000364019 141 ntBASIC1.42□□□□□ -2.18
NKX3-1Q99801 RNU6-290P-201ENST00000365212 101 ntBASIC1.42□□□□□ -2.18
NKX3-1Q99801 RNA5SP190-201ENST00000365222 118 ntBASIC1.42□□□□□ -2.18
NKX3-1Q99801 RNU6-1105P-201ENST00000384774 107 ntBASIC1.42□□□□□ -2.18
NKX3-1Q99801 SNORA26.5-201ENST00000391215 123 ntBASIC1.42□□□□□ -2.18
NKX3-1Q99801 AL627390.1-201ENST00000396055 340 ntBASIC1.42□□□□□ -2.18
NKX3-1Q99801 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.42□□□□□ -2.18
NKX3-1Q99801 RNU6-710P-201ENST00000410424 105 ntBASIC1.42□□□□□ -2.18
NKX3-1Q99801 RN7SKP200-201ENST00000410564 320 ntBASIC1.42□□□□□ -2.18
NKX3-1Q99801 RNU6-1203P-201ENST00000410703 110 ntBASIC1.42□□□□□ -2.18
NKX3-1Q99801 AL358176.2-201ENST00000425769 204 ntBASIC1.42□□□□□ -2.18
NKX3-1Q99801 AL118496.2-201ENST00000448300 230 ntBASIC1.42□□□□□ -2.18
NKX3-1Q99801 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.42□□□□□ -2.18
NKX3-1Q99801 AC117454.1-201ENST00000491120 168 ntBASIC1.42□□□□□ -2.18
NKX3-1Q99801 AC011604.1-201ENST00000545978 196 ntBASIC1.42□□□□□ -2.18
NKX3-1Q99801 AL117187.1-201ENST00000555482 181 ntBASIC1.42□□□□□ -2.18
NKX3-1Q99801 AC068700.1-201ENST00000565862 3754 ntBASIC1.42□□□□□ -2.18
NKX3-1Q99801 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.41□□□□□ -2.18
NKX3-1Q99801 RNU6-1309P-201ENST00000363305 108 ntBASIC1.41□□□□□ -2.18
NKX3-1Q99801 RNU4-41P-201ENST00000364426 143 ntBASIC1.41□□□□□ -2.18
NKX3-1Q99801 Y_RNA.574-201ENST00000384766 95 ntBASIC1.41□□□□□ -2.18
NKX3-1Q99801 MIR1267-201ENST00000408723 78 ntBASIC1.41□□□□□ -2.18
NKX3-1Q99801 Y_RNA.621-201ENST00000411065 96 ntBASIC1.41□□□□□ -2.18
NKX3-1Q99801 RN7SKP101-201ENST00000411376 320 ntBASIC1.41□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 171.5 ms