Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC018630.2-201ENST00000534866 2403 ntBASIC2.16□□□□□ -2.06
PTCHD3Q3KNS1 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
PTCHD3Q3KNS1 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
PTCHD3Q3KNS1 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
PTCHD3Q3KNS1 MIR411-201ENST00000362239 96 ntBASIC2.15□□□□□ -2.07
PTCHD3Q3KNS1 MIRLET7G-201ENST00000362280 84 ntBASIC2.15□□□□□ -2.07
PTCHD3Q3KNS1 RNU6-653P-201ENST00000363074 106 ntBASIC2.15□□□□□ -2.07
PTCHD3Q3KNS1 RNU6-1205P-201ENST00000363625 106 ntBASIC2.15□□□□□ -2.07
PTCHD3Q3KNS1 RNU6-674P-201ENST00000363831 107 ntBASIC2.15□□□□□ -2.07
PTCHD3Q3KNS1 RNU6-1019P-201ENST00000364424 107 ntBASIC2.15□□□□□ -2.07
PTCHD3Q3KNS1 Y_RNA.297-201ENST00000364950 91 ntBASIC2.15□□□□□ -2.07
PTCHD3Q3KNS1 SNORA8-201ENST00000384574 139 ntBASIC2.15□□□□□ -2.07
PTCHD3Q3KNS1 MIR526A2-201ENST00000390198 65 ntBASIC2.15□□□□□ -2.07
PTCHD3Q3KNS1 SNORA48.1-201ENST00000390879 135 ntBASIC2.15□□□□□ -2.07
PTCHD3Q3KNS1 SNORA36B-201ENST00000410438 131 ntBASIC2.15□□□□□ -2.07
PTCHD3Q3KNS1 RNU2-64P-201ENST00000411315 191 ntBASIC2.15□□□□□ -2.07
PTCHD3Q3KNS1 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.15□□□□□ -2.07
PTCHD3Q3KNS1 AL163195.1-201ENST00000496941 348 ntBASIC2.15□□□□□ -2.07
PTCHD3Q3KNS1 RNU6-341P-201ENST00000516973 96 ntBASIC2.15□□□□□ -2.07
PTCHD3Q3KNS1 IGLV3-17-201ENST00000519099 244 ntBASIC2.15□□□□□ -2.07
PTCHD3Q3KNS1 CARD18-203ENST00000532895 422 ntTSL 2 BASIC2.15□□□□□ -2.07
PTCHD3Q3KNS1 AC078899.2-201ENST00000595282 212 ntBASIC2.15□□□□□ -2.07
PTCHD3Q3KNS1 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.15□□□□□ -2.07
PTCHD3Q3KNS1 Y_RNA.29-201ENST00000362570 113 ntBASIC2.14□□□□□ -2.07
PTCHD3Q3KNS1 Y_RNA.274-201ENST00000364714 101 ntBASIC2.14□□□□□ -2.07
PTCHD3Q3KNS1 SNORA6-201ENST00000384033 151 ntBASIC2.14□□□□□ -2.07
PTCHD3Q3KNS1 MIR597-201ENST00000384968 97 ntBASIC2.14□□□□□ -2.07
PTCHD3Q3KNS1 AC069257.2-201ENST00000441819 155 ntBASIC2.14□□□□□ -2.07
PTCHD3Q3KNS1 RPS4XP11-201ENST00000446897 772 ntBASIC2.14□□□□□ -2.07
PTCHD3Q3KNS1 RNU7-193P-201ENST00000516723 65 ntBASIC2.14□□□□□ -2.07
PTCHD3Q3KNS1 AC069114.2-201ENST00000604699 304 ntBASIC2.14□□□□□ -2.07
PTCHD3Q3KNS1 MIR6079-201ENST00000635807 62 ntBASIC2.14□□□□□ -2.07
PTCHD3Q3KNS1 AP000553.5-201ENST00000641933 54 ntBASIC2.14□□□□□ -2.07
PTCHD3Q3KNS1 SNORA33-201ENST00000363664 130 ntBASIC2.13□□□□□ -2.07
PTCHD3Q3KNS1 RNU6-136P-201ENST00000384663 107 ntBASIC2.13□□□□□ -2.07
PTCHD3Q3KNS1 SNORA8.3-201ENST00000384679 139 ntBASIC2.13□□□□□ -2.07
PTCHD3Q3KNS1 MIR626-201ENST00000385032 94 ntBASIC2.13□□□□□ -2.07
PTCHD3Q3KNS1 Y_RNA.644-201ENST00000459006 113 ntBASIC2.13□□□□□ -2.07
PTCHD3Q3KNS1 snoU13.26-201ENST00000459452 105 ntBASIC2.13□□□□□ -2.07
PTCHD3Q3KNS1 AC104435.1-201ENST00000483483 166 ntBASIC2.13□□□□□ -2.07
PTCHD3Q3KNS1 Y_RNA.674-201ENST00000516362 113 ntBASIC2.13□□□□□ -2.07
PTCHD3Q3KNS1 RNU6-1096P-201ENST00000517089 102 ntBASIC2.13□□□□□ -2.07
PTCHD3Q3KNS1 AC100767.1-201ENST00000528178 123 ntBASIC2.13□□□□□ -2.07
PTCHD3Q3KNS1 CBX3P4-201ENST00000538909 354 ntBASIC2.13□□□□□ -2.07
PTCHD3Q3KNS1 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.13□□□□□ -2.07
PTCHD3Q3KNS1 Y_RNA.802-201ENST00000614892 130 ntBASIC2.13□□□□□ -2.07
PTCHD3Q3KNS1 AC100821.1-201ENST00000523153 2479 ntBASIC2.13□□□□□ -2.07
PTCHD3Q3KNS1 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.13□□□□□ -2.07
PTCHD3Q3KNS1 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
PTCHD3Q3KNS1 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.12□□□□□ -2.07
PTCHD3Q3KNS1 Y_RNA.293-201ENST00000364908 93 ntBASIC2.12□□□□□ -2.07
PTCHD3Q3KNS1 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.12□□□□□ -2.07
PTCHD3Q3KNS1 RPL23AP54-201ENST00000495129 419 ntBASIC2.12□□□□□ -2.07
PTCHD3Q3KNS1 RNA5SP200-201ENST00000516360 103 ntBASIC2.12□□□□□ -2.07
PTCHD3Q3KNS1 RNU6-182P-201ENST00000516970 105 ntBASIC2.12□□□□□ -2.07
PTCHD3Q3KNS1 SNORA81.3-201ENST00000517283 198 ntBASIC2.12□□□□□ -2.07
PTCHD3Q3KNS1 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
PTCHD3Q3KNS1 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.12□□□□□ -2.07
PTCHD3Q3KNS1 AC011604.1-201ENST00000545978 196 ntBASIC2.12□□□□□ -2.07
PTCHD3Q3KNS1 AC084364.2-201ENST00000546924 395 ntBASIC2.12□□□□□ -2.07
PTCHD3Q3KNS1 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC2.12□□□□□ -2.07
PTCHD3Q3KNS1 AC012640.5-201ENST00000623897 319 ntBASIC2.12□□□□□ -2.07
PTCHD3Q3KNS1 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
PTCHD3Q3KNS1 AC245060.5-201ENST00000610778 3293 ntBASIC2.11□□□□□ -2.07
PTCHD3Q3KNS1 Y_RNA.435-201ENST00000384095 112 ntBASIC2.11□□□□□ -2.07
PTCHD3Q3KNS1 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
PTCHD3Q3KNS1 RNU6-437P-201ENST00000459408 95 ntBASIC2.11□□□□□ -2.07
PTCHD3Q3KNS1 AC091021.1-201ENST00000468051 388 ntBASIC2.11□□□□□ -2.07
PTCHD3Q3KNS1 AC079804.2-201ENST00000490376 200 ntBASIC2.11□□□□□ -2.07
PTCHD3Q3KNS1 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.11□□□□□ -2.07
PTCHD3Q3KNS1 RNU2-19P-201ENST00000517288 84 ntBASIC2.11□□□□□ -2.07
PTCHD3Q3KNS1 IGKV3-31-201ENST00000523109 329 ntBASIC2.11□□□□□ -2.07
PTCHD3Q3KNS1 SUB1P4-201ENST00000566062 339 ntBASIC2.11□□□□□ -2.07
PTCHD3Q3KNS1 MIR5094-201ENST00000578766 85 ntBASIC2.11□□□□□ -2.07
PTCHD3Q3KNS1 MIR4724-201ENST00000579485 89 ntBASIC2.11□□□□□ -2.07
PTCHD3Q3KNS1 MIR2681-201ENST00000581814 105 ntBASIC2.11□□□□□ -2.07
PTCHD3Q3KNS1 MIR6132-201ENST00000622083 109 ntBASIC2.11□□□□□ -2.07
PTCHD3Q3KNS1 AC068700.1-201ENST00000565862 3754 ntBASIC2.1□□□□□ -2.07
PTCHD3Q3KNS1 SNORA64-201ENST00000384674 134 ntBASIC2.1□□□□□ -2.07
PTCHD3Q3KNS1 SNORA48.3-201ENST00000391081 134 ntBASIC2.1□□□□□ -2.07
PTCHD3Q3KNS1 SNORD23.1-201ENST00000408212 104 ntBASIC2.1□□□□□ -2.07
PTCHD3Q3KNS1 RNA5SP501-201ENST00000410990 112 ntBASIC2.1□□□□□ -2.07
PTCHD3Q3KNS1 RNA5SP450-201ENST00000411206 102 ntBASIC2.1□□□□□ -2.07
PTCHD3Q3KNS1 AC245047.4-201ENST00000433189 144 ntBASIC2.1□□□□□ -2.07
PTCHD3Q3KNS1 Z98949.2-201ENST00000440996 144 ntBASIC2.1□□□□□ -2.07
PTCHD3Q3KNS1 snoU13.15-201ENST00000459407 104 ntBASIC2.1□□□□□ -2.07
PTCHD3Q3KNS1 SCARNA16.3-201ENST00000516595 184 ntBASIC2.1□□□□□ -2.07
PTCHD3Q3KNS1 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.1□□□□□ -2.07
PTCHD3Q3KNS1 MIR6840-201ENST00000611937 71 ntBASIC2.1□□□□□ -2.07
PTCHD3Q3KNS1 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
PTCHD3Q3KNS1 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.09□□□□□ -2.07
PTCHD3Q3KNS1 AL596028.1-201ENST00000326971 197 ntBASIC2.09□□□□□ -2.07
PTCHD3Q3KNS1 RNU6-1020P-201ENST00000363684 107 ntBASIC2.09□□□□□ -2.07
PTCHD3Q3KNS1 SNORA63D-201ENST00000364359 132 ntBASIC2.09□□□□□ -2.07
PTCHD3Q3KNS1 Y_RNA.308-201ENST00000365043 101 ntBASIC2.09□□□□□ -2.07
PTCHD3Q3KNS1 SNORA67.3-201ENST00000384366 140 ntBASIC2.09□□□□□ -2.07
PTCHD3Q3KNS1 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
PTCHD3Q3KNS1 RNA5SP338-201ENST00000410495 85 ntBASIC2.09□□□□□ -2.07
PTCHD3Q3KNS1 Y_RNA.793-201ENST00000411222 111 ntBASIC2.09□□□□□ -2.07
PTCHD3Q3KNS1 AC055731.1-201ENST00000474387 401 ntBASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 474.8 ms