Protein–RNA interactions for Protein: Q07011

TNFRSF9, Tumor necrosis factor receptor superfamily member 9, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF9Q07011 CALM2P4-201ENST00000430810 426 ntBASIC0.67□□□□□ -2.3
TNFRSF9Q07011 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.67□□□□□ -2.3
TNFRSF9Q07011 CHEK2P4-201ENST00000450340 246 ntBASIC0.67□□□□□ -2.3
TNFRSF9Q07011 AC093850.1-201ENST00000454121 251 ntBASIC0.67□□□□□ -2.3
TNFRSF9Q07011 AC233266.1-201ENST00000454518 96 ntBASIC0.67□□□□□ -2.3
TNFRSF9Q07011 RPL39P38-201ENST00000467018 153 ntBASIC0.67□□□□□ -2.3
TNFRSF9Q07011 AC092991.1-201ENST00000477176 376 ntBASIC0.67□□□□□ -2.3
TNFRSF9Q07011 OR9P1P-201ENST00000496431 281 ntBASIC0.67□□□□□ -2.3
TNFRSF9Q07011 AC091951.2-201ENST00000500762 203 ntBASIC0.67□□□□□ -2.3
TNFRSF9Q07011 RNU6-341P-201ENST00000516973 96 ntBASIC0.67□□□□□ -2.3
TNFRSF9Q07011 RNU6-699P-201ENST00000517081 110 ntBASIC0.67□□□□□ -2.3
TNFRSF9Q07011 RNU6-165P-201ENST00000517170 99 ntBASIC0.67□□□□□ -2.3
TNFRSF9Q07011 AC144568.1-201ENST00000520139 137 ntBASIC0.67□□□□□ -2.3
TNFRSF9Q07011 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.67□□□□□ -2.3
TNFRSF9Q07011 AC005730.3-201ENST00000583067 366 ntBASIC0.67□□□□□ -2.3
TNFRSF9Q07011 AL162424.1-201ENST00000602325 221 ntBASIC0.67□□□□□ -2.3
TNFRSF9Q07011 AC242852.1-201ENST00000612151 96 ntBASIC0.67□□□□□ -2.3
TNFRSF9Q07011 AC011476.5-201ENST00000615594 130 ntBASIC0.67□□□□□ -2.3
TNFRSF9Q07011 AL513423.1-201ENST00000621695 132 ntBASIC0.67□□□□□ -2.3
TNFRSF9Q07011 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.67□□□□□ -2.3
TNFRSF9Q07011 AC244015.1-201ENST00000622301 99 ntBASIC0.67□□□□□ -2.3
TNFRSF9Q07011 AC068647.2-201ENST00000637380 353 ntBASIC0.67□□□□□ -2.3
TNFRSF9Q07011 Y_RNA.112-201ENST00000363250 102 ntBASIC0.66□□□□□ -2.3
TNFRSF9Q07011 RNU6-626P-201ENST00000363354 107 ntBASIC0.66□□□□□ -2.3
TNFRSF9Q07011 Y_RNA.314-201ENST00000365114 102 ntBASIC0.66□□□□□ -2.3
TNFRSF9Q07011 Y_RNA.387-201ENST00000383918 102 ntBASIC0.66□□□□□ -2.3
TNFRSF9Q07011 RNU6-505P-201ENST00000384427 107 ntBASIC0.66□□□□□ -2.3
TNFRSF9Q07011 MIR660-201ENST00000385235 97 ntBASIC0.66□□□□□ -2.3
TNFRSF9Q07011 MIR613-201ENST00000385248 95 ntBASIC0.66□□□□□ -2.3
TNFRSF9Q07011 RNA5SP511-201ENST00000410487 115 ntBASIC0.66□□□□□ -2.3
TNFRSF9Q07011 RNU5A-5P-201ENST00000411054 116 ntBASIC0.66□□□□□ -2.3
TNFRSF9Q07011 Z98949.2-201ENST00000440996 144 ntBASIC0.66□□□□□ -2.3
TNFRSF9Q07011 RPEP5-201ENST00000441137 268 ntBASIC0.66□□□□□ -2.3
TNFRSF9Q07011 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.66□□□□□ -2.3
TNFRSF9Q07011 ELOCP24-201ENST00000456370 334 ntBASIC0.66□□□□□ -2.3
TNFRSF9Q07011 RNU6-966P-201ENST00000516479 104 ntBASIC0.66□□□□□ -2.3
TNFRSF9Q07011 RNU6-922P-201ENST00000516753 99 ntBASIC0.66□□□□□ -2.3
TNFRSF9Q07011 Y_RNA.718-201ENST00000517110 102 ntBASIC0.66□□□□□ -2.3
TNFRSF9Q07011 RNU2-12P-201ENST00000517216 168 ntBASIC0.66□□□□□ -2.3
TNFRSF9Q07011 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC0.66□□□□□ -2.3
TNFRSF9Q07011 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.66□□□□□ -2.3
TNFRSF9Q07011 UBE2V2P2-201ENST00000587677 504 ntBASIC0.66□□□□□ -2.3
TNFRSF9Q07011 SNORA28-201ENST00000606769 126 ntBASIC0.66□□□□□ -2.3
TNFRSF9Q07011 AL132765.2-201ENST00000610812 351 ntBASIC0.66□□□□□ -2.3
TNFRSF9Q07011 AC025253.1-201ENST00000613623 543 ntBASIC0.66□□□□□ -2.3
TNFRSF9Q07011 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.66□□□□□ -2.3
TNFRSF9Q07011 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.66□□□□□ -2.3
TNFRSF9Q07011 AC138305.3-201ENST00000624988 240 ntBASIC0.66□□□□□ -2.3
TNFRSF9Q07011 MIRLET7C-201ENST00000362160 84 ntBASIC0.65□□□□□ -2.31
TNFRSF9Q07011 Y_RNA.172-201ENST00000363765 102 ntBASIC0.65□□□□□ -2.31
TNFRSF9Q07011 SNORD115-30-201ENST00000364117 82 ntBASIC0.65□□□□□ -2.31
TNFRSF9Q07011 RNU4-41P-201ENST00000364426 143 ntBASIC0.65□□□□□ -2.31
TNFRSF9Q07011 RNU4-76P-201ENST00000364509 141 ntBASIC0.65□□□□□ -2.31
TNFRSF9Q07011 Y_RNA.259-201ENST00000364619 101 ntBASIC0.65□□□□□ -2.31
TNFRSF9Q07011 RNU6-20P-201ENST00000384106 107 ntBASIC0.65□□□□□ -2.31
TNFRSF9Q07011 RNU6-424P-201ENST00000384367 105 ntBASIC0.65□□□□□ -2.31
TNFRSF9Q07011 RNU6-1297P-201ENST00000384415 104 ntBASIC0.65□□□□□ -2.31
TNFRSF9Q07011 RNU6-1199P-201ENST00000411249 104 ntBASIC0.65□□□□□ -2.31
TNFRSF9Q07011 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.65□□□□□ -2.31
TNFRSF9Q07011 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC0.65□□□□□ -2.31
TNFRSF9Q07011 AL049830.1-201ENST00000468034 425 ntBASIC0.65□□□□□ -2.31
TNFRSF9Q07011 RNU6-1278P-201ENST00000516130 107 ntBASIC0.65□□□□□ -2.31
TNFRSF9Q07011 RNU2-56P-201ENST00000516826 190 ntBASIC0.65□□□□□ -2.31
TNFRSF9Q07011 RNU6-1116P-201ENST00000517269 99 ntBASIC0.65□□□□□ -2.31
TNFRSF9Q07011 CYP3A137P-201ENST00000562436 69 ntBASIC0.65□□□□□ -2.31
TNFRSF9Q07011 AC084781.2-201ENST00000615568 161 ntBASIC0.65□□□□□ -2.31
TNFRSF9Q07011 U2.1-201ENST00000618978 145 ntBASIC0.65□□□□□ -2.31
TNFRSF9Q07011 MIR1302-1-201ENST00000637932 143 ntBASIC0.65□□□□□ -2.31
TNFRSF9Q07011 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
TNFRSF9Q07011 RNU6-490P-201ENST00000362985 107 ntBASIC0.64□□□□□ -2.31
TNFRSF9Q07011 Y_RNA.361-201ENST00000365515 120 ntBASIC0.64□□□□□ -2.31
TNFRSF9Q07011 Y_RNA.466-201ENST00000384294 113 ntBASIC0.64□□□□□ -2.31
TNFRSF9Q07011 RNY3P4-201ENST00000384428 101 ntBASIC0.64□□□□□ -2.31
TNFRSF9Q07011 MIR653-201ENST00000385279 96 ntBASIC0.64□□□□□ -2.31
TNFRSF9Q07011 RNY4P36-201ENST00000391116 96 ntBASIC0.64□□□□□ -2.31
TNFRSF9Q07011 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.64□□□□□ -2.31
TNFRSF9Q07011 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.64□□□□□ -2.31
TNFRSF9Q07011 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC0.64□□□□□ -2.31
TNFRSF9Q07011 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.64□□□□□ -2.31
TNFRSF9Q07011 FCF1P4-201ENST00000448326 183 ntBASIC0.64□□□□□ -2.31
TNFRSF9Q07011 Y_RNA.632-201ENST00000459189 102 ntBASIC0.64□□□□□ -2.31
TNFRSF9Q07011 RNU7-12P-201ENST00000516030 62 ntBASIC0.64□□□□□ -2.31
TNFRSF9Q07011 RNU6-875P-201ENST00000516488 106 ntBASIC0.64□□□□□ -2.31
TNFRSF9Q07011 RNU6-1337P-201ENST00000516525 95 ntBASIC0.64□□□□□ -2.31
TNFRSF9Q07011 RNU6-1012P-201ENST00000516606 109 ntBASIC0.64□□□□□ -2.31
TNFRSF9Q07011 RNU7-28P-201ENST00000516759 62 ntBASIC0.64□□□□□ -2.31
TNFRSF9Q07011 RNU7-4P-201ENST00000516961 62 ntBASIC0.64□□□□□ -2.31
TNFRSF9Q07011 RNU6-1096P-201ENST00000517089 102 ntBASIC0.64□□□□□ -2.31
TNFRSF9Q07011 AP002004.2-201ENST00000531656 154 ntBASIC0.64□□□□□ -2.31
TNFRSF9Q07011 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.64□□□□□ -2.31
TNFRSF9Q07011 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC0.64□□□□□ -2.31
TNFRSF9Q07011 AL355375.2-201ENST00000574825 175 ntBASIC0.64□□□□□ -2.31
TNFRSF9Q07011 MIR4659A-201ENST00000580269 81 ntBASIC0.64□□□□□ -2.31
TNFRSF9Q07011 AL117336.2-201ENST00000602435 335 ntBASIC0.64□□□□□ -2.31
TNFRSF9Q07011 AL513534.2-201ENST00000603836 250 ntBASIC0.64□□□□□ -2.31
TNFRSF9Q07011 AC108706.1-201ENST00000611053 297 ntBASIC0.64□□□□□ -2.31
TNFRSF9Q07011 AC240442.1-201ENST00000616055 283 ntBASIC0.64□□□□□ -2.31
TNFRSF9Q07011 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
TNFRSF9Q07011 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.64□□□□□ -2.31
TNFRSF9Q07011 SNORD114-7-201ENST00000362520 77 ntBASIC0.63□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 208.2 ms