Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.36□□□□□ -2.19
LIME1Q9H400 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.36□□□□□ -2.19
LIME1Q9H400 SNORA25.10-201ENST00000515926 124 ntBASIC1.36□□□□□ -2.19
LIME1Q9H400 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.36□□□□□ -2.19
LIME1Q9H400 HSBP1P1-201ENST00000555205 166 ntBASIC1.36□□□□□ -2.19
LIME1Q9H400 Y_RNA.772-201ENST00000606692 102 ntBASIC1.36□□□□□ -2.19
LIME1Q9H400 PART1_1.1-201ENST00000611761 217 ntBASIC1.36□□□□□ -2.19
LIME1Q9H400 Y_RNA.813-201ENST00000364639 102 ntBASIC1.35□□□□□ -2.19
LIME1Q9H400 RNU6-407P-201ENST00000365280 104 ntBASIC1.35□□□□□ -2.19
LIME1Q9H400 SNORD114-22-201ENST00000365423 72 ntBASIC1.35□□□□□ -2.19
LIME1Q9H400 Y_RNA.446-201ENST00000384178 104 ntBASIC1.35□□□□□ -2.19
LIME1Q9H400 SNORD63-201ENST00000384262 68 ntBASIC1.35□□□□□ -2.19
LIME1Q9H400 SNORA67.6-201ENST00000391093 99 ntBASIC1.35□□□□□ -2.19
LIME1Q9H400 MIR934-201ENST00000401241 83 ntBASIC1.35□□□□□ -2.19
LIME1Q9H400 RNU5A-5P-201ENST00000411054 116 ntBASIC1.35□□□□□ -2.19
LIME1Q9H400 RNU2-61P-201ENST00000411069 191 ntBASIC1.35□□□□□ -2.19
LIME1Q9H400 AC010154.1-201ENST00000425857 269 ntBASIC1.35□□□□□ -2.19
LIME1Q9H400 MTND1P14-201ENST00000427400 950 ntBASIC1.35□□□□□ -2.19
LIME1Q9H400 AC245047.3-201ENST00000429428 127 ntBASIC1.35□□□□□ -2.19
LIME1Q9H400 MTCYBP6-201ENST00000441810 138 ntBASIC1.35□□□□□ -2.19
LIME1Q9H400 AC005908.1-201ENST00000468701 347 ntBASIC1.35□□□□□ -2.19
LIME1Q9H400 SNORA70.12-201ENST00000516084 153 ntBASIC1.35□□□□□ -2.19
LIME1Q9H400 Y_RNA.713-201ENST00000517013 96 ntBASIC1.35□□□□□ -2.19
LIME1Q9H400 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.35□□□□□ -2.19
LIME1Q9H400 AC020661.2-201ENST00000560114 134 ntBASIC1.35□□□□□ -2.19
LIME1Q9H400 MIR4709-201ENST00000577272 72 ntBASIC1.35□□□□□ -2.19
LIME1Q9H400 MIR4421-201ENST00000578133 69 ntBASIC1.35□□□□□ -2.19
LIME1Q9H400 RPS29P30-201ENST00000600975 111 ntBASIC1.35□□□□□ -2.19
LIME1Q9H400 MIR8054-201ENST00000620877 86 ntBASIC1.35□□□□□ -2.19
LIME1Q9H400 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.35□□□□□ -2.19
LIME1Q9H400 AC091895.1-201ENST00000624494 256 ntBASIC1.35□□□□□ -2.19
LIME1Q9H400 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC1.35□□□□□ -2.19
LIME1Q9H400 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
LIME1Q9H400 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
LIME1Q9H400 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
LIME1Q9H400 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
LIME1Q9H400 RNU4-13P-201ENST00000364019 141 ntBASIC1.34□□□□□ -2.19
LIME1Q9H400 RNU6-53P-201ENST00000365367 106 ntBASIC1.34□□□□□ -2.19
LIME1Q9H400 SNORA63.7-201ENST00000365579 123 ntBASIC1.34□□□□□ -2.19
LIME1Q9H400 SNORD14.1-201ENST00000365609 90 ntBASIC1.34□□□□□ -2.19
LIME1Q9H400 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.34□□□□□ -2.19
LIME1Q9H400 RNU6-203P-201ENST00000384038 104 ntBASIC1.34□□□□□ -2.19
LIME1Q9H400 RNU6-505P-201ENST00000384427 107 ntBASIC1.34□□□□□ -2.19
LIME1Q9H400 RNU11-5P-201ENST00000391216 129 ntBASIC1.34□□□□□ -2.19
LIME1Q9H400 MRPL42P3-201ENST00000401492 326 ntBASIC1.34□□□□□ -2.19
LIME1Q9H400 MIR1267-201ENST00000408723 78 ntBASIC1.34□□□□□ -2.19
LIME1Q9H400 RN7SKP101-201ENST00000411376 320 ntBASIC1.34□□□□□ -2.19
LIME1Q9H400 AL390729.2-201ENST00000416137 156 ntBASIC1.34□□□□□ -2.19
LIME1Q9H400 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.34□□□□□ -2.19
LIME1Q9H400 MTCO2P12-201ENST00000427426 682 ntBASIC1.34□□□□□ -2.19
LIME1Q9H400 RNU1-123P-201ENST00000458950 160 ntBASIC1.34□□□□□ -2.19
LIME1Q9H400 U8.20-201ENST00000459445 131 ntBASIC1.34□□□□□ -2.19
LIME1Q9H400 RNU6-1278P-201ENST00000516130 107 ntBASIC1.34□□□□□ -2.19
LIME1Q9H400 RNU6-436P-201ENST00000516171 114 ntBASIC1.34□□□□□ -2.19
LIME1Q9H400 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.34□□□□□ -2.19
LIME1Q9H400 AC022616.4-201ENST00000522985 181 ntBASIC1.34□□□□□ -2.19
LIME1Q9H400 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.34□□□□□ -2.19
LIME1Q9H400 AL161670.1-201ENST00000554348 137 ntBASIC1.34□□□□□ -2.19
LIME1Q9H400 AC006380.1-201ENST00000603598 186 ntBASIC1.34□□□□□ -2.19
LIME1Q9H400 AL078603.1-201ENST00000603824 313 ntBASIC1.34□□□□□ -2.19
LIME1Q9H400 AL021879.1-201ENST00000611756 288 ntBASIC1.34□□□□□ -2.19
LIME1Q9H400 RMST_2.1-201ENST00000617263 136 ntBASIC1.34□□□□□ -2.19
LIME1Q9H400 MIR6734-201ENST00000621166 68 ntBASIC1.34□□□□□ -2.19
LIME1Q9H400 AC095038.3-201ENST00000634439 195 ntBASIC1.34□□□□□ -2.19
LIME1Q9H400 MIR6079-201ENST00000635807 62 ntBASIC1.34□□□□□ -2.19
LIME1Q9H400 ZNF209P-201ENST00000593450 2304 ntBASIC1.34□□□□□ -2.2
LIME1Q9H400 Y_RNA.11-201ENST00000362375 109 ntBASIC1.33□□□□□ -2.2
LIME1Q9H400 RNU4-76P-201ENST00000364509 141 ntBASIC1.33□□□□□ -2.2
LIME1Q9H400 RNU6-1175P-201ENST00000365200 107 ntBASIC1.33□□□□□ -2.2
LIME1Q9H400 SNORA22B-201ENST00000383876 138 ntBASIC1.33□□□□□ -2.2
LIME1Q9H400 RNU6-42P-201ENST00000384165 107 ntBASIC1.33□□□□□ -2.2
LIME1Q9H400 Y_RNA.551-201ENST00000384661 102 ntBASIC1.33□□□□□ -2.2
LIME1Q9H400 RNU6-1031P-201ENST00000384773 107 ntBASIC1.33□□□□□ -2.2
LIME1Q9H400 MIR320A-201ENST00000385302 82 ntBASIC1.33□□□□□ -2.2
LIME1Q9H400 COX6CP10-201ENST00000416832 224 ntBASIC1.33□□□□□ -2.2
LIME1Q9H400 AC005042.3-201ENST00000453230 174 ntBASIC1.33□□□□□ -2.2
LIME1Q9H400 RNU6-155P-201ENST00000516347 100 ntBASIC1.33□□□□□ -2.2
LIME1Q9H400 RNU6-341P-201ENST00000516973 96 ntBASIC1.33□□□□□ -2.2
LIME1Q9H400 AC015688.6-201ENST00000577737 104 ntBASIC1.33□□□□□ -2.2
LIME1Q9H400 AL929325.1-201ENST00000603096 117 ntBASIC1.33□□□□□ -2.2
LIME1Q9H400 AC104695.3-201ENST00000604052 296 ntBASIC1.33□□□□□ -2.2
LIME1Q9H400 AC016925.2-201ENST00000605108 242 ntBASIC1.33□□□□□ -2.2
LIME1Q9H400 AC021506.2-201ENST00000612354 169 ntBASIC1.33□□□□□ -2.2
LIME1Q9H400 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.33□□□□□ -2.2
LIME1Q9H400 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
LIME1Q9H400 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.32□□□□□ -2.2
LIME1Q9H400 MIR126-201ENST00000362291 85 ntBASIC1.32□□□□□ -2.2
LIME1Q9H400 RNU6-1123P-201ENST00000362347 106 ntBASIC1.32□□□□□ -2.2
LIME1Q9H400 Y_RNA.471-201ENST00000384312 102 ntBASIC1.32□□□□□ -2.2
LIME1Q9H400 MIR562-201ENST00000384894 95 ntBASIC1.32□□□□□ -2.2
LIME1Q9H400 RNU7-34P-201ENST00000459394 64 ntBASIC1.32□□□□□ -2.2
LIME1Q9H400 AC091021.1-201ENST00000468051 388 ntBASIC1.32□□□□□ -2.2
LIME1Q9H400 Y_RNA.715-201ENST00000517082 110 ntBASIC1.32□□□□□ -2.2
LIME1Q9H400 RNU6-988P-201ENST00000519081 107 ntBASIC1.32□□□□□ -2.2
LIME1Q9H400 MIR4285-201ENST00000581001 85 ntBASIC1.32□□□□□ -2.2
LIME1Q9H400 MIR3171-201ENST00000584270 74 ntBASIC1.32□□□□□ -2.2
LIME1Q9H400 AC127459.3-201ENST00000624328 466 ntBASIC1.32□□□□□ -2.2
LIME1Q9H400 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.32□□□□□ -2.2
LIME1Q9H400 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.32□□□□□ -2.2
LIME1Q9H400 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 196.2 ms