Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.97□□□□□ -2.25
CCDC43Q96MW1 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.97□□□□□ -2.25
CCDC43Q96MW1 RNU7-21P-201ENST00000459430 62 ntBASIC0.97□□□□□ -2.25
CCDC43Q96MW1 RPL17P19-201ENST00000489069 552 ntBASIC0.97□□□□□ -2.25
CCDC43Q96MW1 AC069439.1-201ENST00000494739 167 ntBASIC0.97□□□□□ -2.25
CCDC43Q96MW1 RNU6-408P-201ENST00000515910 100 ntBASIC0.97□□□□□ -2.25
CCDC43Q96MW1 MIR4698-201ENST00000577795 80 ntBASIC0.97□□□□□ -2.25
CCDC43Q96MW1 MIR6767-201ENST00000637302 66 ntBASIC0.97□□□□□ -2.25
CCDC43Q96MW1 Y_RNA.6-201ENST00000362350 114 ntBASIC0.96□□□□□ -2.26
CCDC43Q96MW1 SNORD114-7-201ENST00000362520 77 ntBASIC0.96□□□□□ -2.26
CCDC43Q96MW1 RNU4-40P-201ENST00000364351 143 ntBASIC0.96□□□□□ -2.26
CCDC43Q96MW1 RNU1-93P-201ENST00000364704 169 ntBASIC0.96□□□□□ -2.26
CCDC43Q96MW1 MIR200A-201ENST00000384875 90 ntBASIC0.96□□□□□ -2.26
CCDC43Q96MW1 SNORA75.2-201ENST00000391138 150 ntBASIC0.96□□□□□ -2.26
CCDC43Q96MW1 SNORA75.3-201ENST00000391231 150 ntBASIC0.96□□□□□ -2.26
CCDC43Q96MW1 SNORA75.4-201ENST00000391278 119 ntBASIC0.96□□□□□ -2.26
CCDC43Q96MW1 RNA5SP247-201ENST00000411181 105 ntBASIC0.96□□□□□ -2.26
CCDC43Q96MW1 ELOCP24-201ENST00000456370 334 ntBASIC0.96□□□□□ -2.26
CCDC43Q96MW1 snoU13.25-201ENST00000458945 104 ntBASIC0.96□□□□□ -2.26
CCDC43Q96MW1 MIR2053-201ENST00000459295 91 ntBASIC0.96□□□□□ -2.26
CCDC43Q96MW1 CYCTP-201ENST00000504253 315 ntBASIC0.96□□□□□ -2.26
CCDC43Q96MW1 SNORD111.1-201ENST00000516421 86 ntBASIC0.96□□□□□ -2.26
CCDC43Q96MW1 AC011712.1-201ENST00000588959 234 ntBASIC0.96□□□□□ -2.26
CCDC43Q96MW1 AC120024.3-201ENST00000603167 156 ntBASIC0.96□□□□□ -2.26
CCDC43Q96MW1 AC004467.1-201ENST00000615678 330 ntBASIC0.96□□□□□ -2.26
CCDC43Q96MW1 AL008636.1-201ENST00000625038 1018 ntBASIC0.96□□□□□ -2.26
CCDC43Q96MW1 AC073869.6-201ENST00000640656 341 ntBASIC0.96□□□□□ -2.26
CCDC43Q96MW1 SNORD114-2-201ENST00000363953 78 ntBASIC0.95□□□□□ -2.26
CCDC43Q96MW1 Y_RNA.226-201ENST00000364337 114 ntBASIC0.95□□□□□ -2.26
CCDC43Q96MW1 RNU6-99P-201ENST00000364721 107 ntBASIC0.95□□□□□ -2.26
CCDC43Q96MW1 MIR942-201ENST00000401111 86 ntBASIC0.95□□□□□ -2.26
CCDC43Q96MW1 MIR1287-201ENST00000408492 90 ntBASIC0.95□□□□□ -2.26
CCDC43Q96MW1 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.95□□□□□ -2.26
CCDC43Q96MW1 AC245047.8-201ENST00000456455 284 ntBASIC0.95□□□□□ -2.26
CCDC43Q96MW1 AC090142.3-201ENST00000519012 385 ntBASIC0.95□□□□□ -2.26
CCDC43Q96MW1 AC023442.1-201ENST00000531247 422 ntBASIC0.95□□□□□ -2.26
CCDC43Q96MW1 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC0.95□□□□□ -2.26
CCDC43Q96MW1 MIR3192-201ENST00000584920 77 ntBASIC0.95□□□□□ -2.26
CCDC43Q96MW1 AC013244.2-201ENST00000603396 103 ntBASIC0.95□□□□□ -2.26
CCDC43Q96MW1 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC0.95□□□□□ -2.26
CCDC43Q96MW1 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC0.95□□□□□ -2.26
CCDC43Q96MW1 RPEP5-201ENST00000441137 268 ntBASIC0.94□□□□□ -2.26
CCDC43Q96MW1 AC116353.2-201ENST00000505332 712 ntBASIC0.94□□□□□ -2.26
CCDC43Q96MW1 AC114811.1-201ENST00000507207 168 ntBASIC0.94□□□□□ -2.26
CCDC43Q96MW1 RNU6-1337P-201ENST00000516525 95 ntBASIC0.94□□□□□ -2.26
CCDC43Q96MW1 RNU6-307P-201ENST00000516743 106 ntBASIC0.94□□□□□ -2.26
CCDC43Q96MW1 RNU6-1213P-201ENST00000517075 94 ntBASIC0.94□□□□□ -2.26
CCDC43Q96MW1 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC0.94□□□□□ -2.26
CCDC43Q96MW1 MIR3973-201ENST00000579824 107 ntBASIC0.94□□□□□ -2.26
CCDC43Q96MW1 FAM71BP1-201ENST00000604431 523 ntBASIC0.94□□□□□ -2.26
CCDC43Q96MW1 AL391903.3-201ENST00000612158 163 ntBASIC0.94□□□□□ -2.26
CCDC43Q96MW1 AC027279.3-201ENST00000625055 122 ntBASIC0.94□□□□□ -2.26
CCDC43Q96MW1 Y_RNA.336-201ENST00000365307 109 ntBASIC0.93□□□□□ -2.26
CCDC43Q96MW1 SNORD116-13-201ENST00000384408 92 ntBASIC0.93□□□□□ -2.26
CCDC43Q96MW1 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC0.93□□□□□ -2.26
CCDC43Q96MW1 AL162725.1-201ENST00000435405 301 ntBASIC0.93□□□□□ -2.26
CCDC43Q96MW1 RPS4XP11-201ENST00000446897 772 ntBASIC0.93□□□□□ -2.26
CCDC43Q96MW1 RNU7-90P-201ENST00000459216 62 ntBASIC0.93□□□□□ -2.26
CCDC43Q96MW1 RPL39P28-201ENST00000465655 155 ntBASIC0.93□□□□□ -2.26
CCDC43Q96MW1 RNU6-197P-201ENST00000516680 100 ntBASIC0.93□□□□□ -2.26
CCDC43Q96MW1 RNU2-12P-201ENST00000517216 168 ntBASIC0.93□□□□□ -2.26
CCDC43Q96MW1 AC055872.1-201ENST00000570978 278 ntBASIC0.93□□□□□ -2.26
CCDC43Q96MW1 AC108706.1-201ENST00000611053 297 ntBASIC0.93□□□□□ -2.26
CCDC43Q96MW1 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.93□□□□□ -2.26
CCDC43Q96MW1 RNU6-961P-201ENST00000363893 105 ntBASIC0.92□□□□□ -2.26
CCDC43Q96MW1 SNORD115-30-201ENST00000364117 82 ntBASIC0.92□□□□□ -2.26
CCDC43Q96MW1 RNU6-926P-201ENST00000384075 107 ntBASIC0.92□□□□□ -2.26
CCDC43Q96MW1 RNU6-1105P-201ENST00000384774 107 ntBASIC0.92□□□□□ -2.26
CCDC43Q96MW1 MIR520E-201ENST00000384867 87 ntBASIC0.92□□□□□ -2.26
CCDC43Q96MW1 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.92□□□□□ -2.26
CCDC43Q96MW1 RPS20P10-201ENST00000451209 253 ntBASIC0.92□□□□□ -2.26
CCDC43Q96MW1 RPS29P1-201ENST00000465274 159 ntBASIC0.92□□□□□ -2.26
CCDC43Q96MW1 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC0.92□□□□□ -2.26
CCDC43Q96MW1 RNU4ATAC7P-201ENST00000516280 125 ntBASIC0.92□□□□□ -2.26
CCDC43Q96MW1 RNU6-358P-201ENST00000516564 75 ntBASIC0.92□□□□□ -2.26
CCDC43Q96MW1 RNU7-30P-201ENST00000516835 62 ntBASIC0.92□□□□□ -2.26
CCDC43Q96MW1 MIR2355-201ENST00000517199 87 ntBASIC0.92□□□□□ -2.26
CCDC43Q96MW1 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC0.92□□□□□ -2.26
CCDC43Q96MW1 AL078603.1-201ENST00000603824 313 ntBASIC0.92□□□□□ -2.26
CCDC43Q96MW1 AC084782.3-201ENST00000612282 578 ntBASIC0.92□□□□□ -2.26
CCDC43Q96MW1 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.92□□□□□ -2.26
CCDC43Q96MW1 AL591926.4-201ENST00000616895 298 ntBASIC0.92□□□□□ -2.26
CCDC43Q96MW1 MIR6866-201ENST00000638146 69 ntBASIC0.92□□□□□ -2.26
CCDC43Q96MW1 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.92□□□□□ -2.26
CCDC43Q96MW1 AC027514.1-201ENST00000588561 1603 ntBASIC0.91□□□□□ -2.26
CCDC43Q96MW1 Y_RNA.72-201ENST00000362894 103 ntBASIC0.91□□□□□ -2.26
CCDC43Q96MW1 Y_RNA.361-201ENST00000365515 120 ntBASIC0.91□□□□□ -2.26
CCDC43Q96MW1 MIR608-201ENST00000384820 100 ntBASIC0.91□□□□□ -2.26
CCDC43Q96MW1 MIR1298-201ENST00000408783 112 ntBASIC0.91□□□□□ -2.26
CCDC43Q96MW1 RPS3AP1-201ENST00000413190 320 ntBASIC0.91□□□□□ -2.26
CCDC43Q96MW1 MTND4P28-201ENST00000426217 387 ntBASIC0.91□□□□□ -2.26
CCDC43Q96MW1 MTND1P34-201ENST00000438556 671 ntBASIC0.91□□□□□ -2.26
CCDC43Q96MW1 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.91□□□□□ -2.26
CCDC43Q96MW1 PSMC1P5-201ENST00000512850 177 ntBASIC0.91□□□□□ -2.26
CCDC43Q96MW1 RNU6-120P-201ENST00000516077 103 ntBASIC0.91□□□□□ -2.26
CCDC43Q96MW1 AC060780.3-201ENST00000589464 80 ntBASIC0.91□□□□□ -2.26
CCDC43Q96MW1 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC0.91□□□□□ -2.26
CCDC43Q96MW1 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.91□□□□□ -2.26
CCDC43Q96MW1 MIR452-201ENST00000385020 85 ntBASIC0.9□□□□□ -2.27
CCDC43Q96MW1 RNU2-64P-201ENST00000411315 191 ntBASIC0.9□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 168.8 ms