Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 Y_RNA.679-201ENST00000516416 91 ntBASIC1.99□□□□□ -2.09
CCDC28AQ8IWP9 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC1.99□□□□□ -2.09
CCDC28AQ8IWP9 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC1.99□□□□□ -2.09
CCDC28AQ8IWP9 AC134026.1-201ENST00000623249 2239 ntBASIC1.98□□□□□ -2.09
CCDC28AQ8IWP9 MIR21-201ENST00000362134 72 ntBASIC1.98□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.188-201ENST00000363952 111 ntBASIC1.98□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.333-201ENST00000365274 102 ntBASIC1.98□□□□□ -2.09
CCDC28AQ8IWP9 MT-TG-201ENST00000387429 68 ntBASIC1.98□□□□□ -2.09
CCDC28AQ8IWP9 RNU6-440P-201ENST00000390882 105 ntBASIC1.98□□□□□ -2.09
CCDC28AQ8IWP9 AL138827.1-201ENST00000402666 306 ntBASIC1.98□□□□□ -2.09
CCDC28AQ8IWP9 RN7SKP200-201ENST00000410564 320 ntBASIC1.98□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.621-201ENST00000411065 96 ntBASIC1.98□□□□□ -2.09
CCDC28AQ8IWP9 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC28AQ8IWP9 COX6CP10-201ENST00000416832 224 ntBASIC1.98□□□□□ -2.09
CCDC28AQ8IWP9 RAB6C-AS1-202ENST00000433431 123 ntBASIC1.98□□□□□ -2.09
CCDC28AQ8IWP9 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC28AQ8IWP9 SNORD2.1-201ENST00000458762 69 ntBASIC1.98□□□□□ -2.09
CCDC28AQ8IWP9 RNA5SP233-201ENST00000459153 113 ntBASIC1.98□□□□□ -2.09
CCDC28AQ8IWP9 snoU13.27-201ENST00000459278 104 ntBASIC1.98□□□□□ -2.09
CCDC28AQ8IWP9 S100A11P2-201ENST00000467589 312 ntBASIC1.98□□□□□ -2.09
CCDC28AQ8IWP9 RPL23AP54-201ENST00000495129 419 ntBASIC1.98□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.673-201ENST00000516306 88 ntBASIC1.98□□□□□ -2.09
CCDC28AQ8IWP9 AC022254.1-201ENST00000567857 235 ntBASIC1.98□□□□□ -2.09
CCDC28AQ8IWP9 AC012493.3-201ENST00000604494 112 ntBASIC1.98□□□□□ -2.09
CCDC28AQ8IWP9 AL008718.3-201ENST00000610217 321 ntBASIC1.98□□□□□ -2.09
CCDC28AQ8IWP9 CTSLP2-204ENST00000629029 392 ntBASIC1.98□□□□□ -2.09
CCDC28AQ8IWP9 AL137790.1-201ENST00000634283 177 ntBASIC1.98□□□□□ -2.09
CCDC28AQ8IWP9 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
CCDC28AQ8IWP9 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.97□□□□□ -2.09
CCDC28AQ8IWP9 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.97□□□□□ -2.09
CCDC28AQ8IWP9 SNORA1B-201ENST00000362535 133 ntBASIC1.97□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.60-201ENST00000362831 98 ntBASIC1.97□□□□□ -2.09
CCDC28AQ8IWP9 RNU6-1205P-201ENST00000363625 106 ntBASIC1.97□□□□□ -2.09
CCDC28AQ8IWP9 SNORA20.1-201ENST00000364790 130 ntBASIC1.97□□□□□ -2.09
CCDC28AQ8IWP9 SNORA4.2-201ENST00000365313 147 ntBASIC1.97□□□□□ -2.09
CCDC28AQ8IWP9 RNU6-144P-201ENST00000383951 107 ntBASIC1.97□□□□□ -2.09
CCDC28AQ8IWP9 RNU6-211P-201ENST00000384047 107 ntBASIC1.97□□□□□ -2.09
CCDC28AQ8IWP9 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
CCDC28AQ8IWP9 RNU6-360P-201ENST00000390944 104 ntBASIC1.97□□□□□ -2.09
CCDC28AQ8IWP9 SNORA11-201ENST00000408789 128 ntBASIC1.97□□□□□ -2.09
CCDC28AQ8IWP9 SNORA36B-201ENST00000410438 131 ntBASIC1.97□□□□□ -2.09
CCDC28AQ8IWP9 RNA5SP21-201ENST00000410917 96 ntBASIC1.97□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.680-201ENST00000516441 93 ntBASIC1.97□□□□□ -2.09
CCDC28AQ8IWP9 SNORA31.10-201ENST00000516482 106 ntBASIC1.97□□□□□ -2.09
CCDC28AQ8IWP9 RNU7-28P-201ENST00000516759 62 ntBASIC1.97□□□□□ -2.09
CCDC28AQ8IWP9 MIR4709-201ENST00000577272 72 ntBASIC1.97□□□□□ -2.09
CCDC28AQ8IWP9 MIR5692C2-201ENST00000577959 77 ntBASIC1.97□□□□□ -2.09
CCDC28AQ8IWP9 MIR4713-201ENST00000582691 75 ntBASIC1.97□□□□□ -2.09
CCDC28AQ8IWP9 MIR3935-201ENST00000583472 104 ntBASIC1.97□□□□□ -2.09
CCDC28AQ8IWP9 ELOCP29-201ENST00000588193 334 ntBASIC1.97□□□□□ -2.09
CCDC28AQ8IWP9 AC005357.1-201ENST00000588399 301 ntBASIC1.97□□□□□ -2.09
CCDC28AQ8IWP9 SNORA28-201ENST00000606769 126 ntBASIC1.97□□□□□ -2.09
CCDC28AQ8IWP9 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC1.97□□□□□ -2.09
CCDC28AQ8IWP9 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.96□□□□□ -2.09
CCDC28AQ8IWP9 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.96□□□□□ -2.1
CCDC28AQ8IWP9 AL049830.1-201ENST00000468034 425 ntBASIC1.96□□□□□ -2.1
CCDC28AQ8IWP9 RNU1-40P-201ENST00000516816 164 ntBASIC1.96□□□□□ -2.1
CCDC28AQ8IWP9 RNU1-97P-201ENST00000516872 164 ntBASIC1.96□□□□□ -2.1
CCDC28AQ8IWP9 RNU6-1271P-201ENST00000517049 105 ntBASIC1.96□□□□□ -2.1
CCDC28AQ8IWP9 AC091544.4-201ENST00000555268 342 ntBASIC1.96□□□□□ -2.1
CCDC28AQ8IWP9 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.96□□□□□ -2.1
CCDC28AQ8IWP9 MIR4282-201ENST00000583613 67 ntBASIC1.96□□□□□ -2.1
CCDC28AQ8IWP9 AC006006.1-201ENST00000603082 144 ntBASIC1.96□□□□□ -2.1
CCDC28AQ8IWP9 AL627230.6-201ENST00000611129 280 ntBASIC1.96□□□□□ -2.1
CCDC28AQ8IWP9 AC073349.3-201ENST00000617616 186 ntBASIC1.96□□□□□ -2.1
CCDC28AQ8IWP9 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
CCDC28AQ8IWP9 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.95□□□□□ -2.1
CCDC28AQ8IWP9 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
CCDC28AQ8IWP9 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
CCDC28AQ8IWP9 Y_RNA.122-201ENST00000363331 96 ntBASIC1.95□□□□□ -2.1
CCDC28AQ8IWP9 RNU1-112P-201ENST00000364401 164 ntBASIC1.95□□□□□ -2.1
CCDC28AQ8IWP9 Y_RNA.265-201ENST00000364677 108 ntBASIC1.95□□□□□ -2.1
CCDC28AQ8IWP9 RNU6-1080P-201ENST00000383982 107 ntBASIC1.95□□□□□ -2.1
CCDC28AQ8IWP9 SNORA44-201ENST00000384584 132 ntBASIC1.95□□□□□ -2.1
CCDC28AQ8IWP9 SNORD58.1-201ENST00000391313 66 ntBASIC1.95□□□□□ -2.1
CCDC28AQ8IWP9 AL034345.1-201ENST00000407768 123 ntBASIC1.95□□□□□ -2.1
CCDC28AQ8IWP9 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC28AQ8IWP9 AC063976.3-201ENST00000426849 329 ntBASIC1.95□□□□□ -2.1
CCDC28AQ8IWP9 FTH1P12-201ENST00000432137 551 ntBASIC1.95□□□□□ -2.1
CCDC28AQ8IWP9 RNU7-34P-201ENST00000459394 64 ntBASIC1.95□□□□□ -2.1
CCDC28AQ8IWP9 RNU6-437P-201ENST00000459408 95 ntBASIC1.95□□□□□ -2.1
CCDC28AQ8IWP9 AC096725.1-201ENST00000514266 313 ntBASIC1.95□□□□□ -2.1
CCDC28AQ8IWP9 MIR4643-201ENST00000577473 78 ntBASIC1.95□□□□□ -2.1
CCDC28AQ8IWP9 AL929325.1-201ENST00000603096 117 ntBASIC1.95□□□□□ -2.1
CCDC28AQ8IWP9 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
CCDC28AQ8IWP9 RNA5SP456-201ENST00000364002 114 ntBASIC1.94□□□□□ -2.1
CCDC28AQ8IWP9 SNORD114-30-201ENST00000364448 72 ntBASIC1.94□□□□□ -2.1
CCDC28AQ8IWP9 Y_RNA.539-201ENST00000384635 107 ntBASIC1.94□□□□□ -2.1
CCDC28AQ8IWP9 MIR9-1-201ENST00000385198 89 ntBASIC1.94□□□□□ -2.1
CCDC28AQ8IWP9 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
CCDC28AQ8IWP9 RNA5SP482-201ENST00000391269 118 ntBASIC1.94□□□□□ -2.1
CCDC28AQ8IWP9 SNORA11.1-201ENST00000408133 129 ntBASIC1.94□□□□□ -2.1
CCDC28AQ8IWP9 RNU6-651P-201ENST00000411040 105 ntBASIC1.94□□□□□ -2.1
CCDC28AQ8IWP9 STAG3L5P-204ENST00000443759 179 ntBASIC1.94□□□□□ -2.1
CCDC28AQ8IWP9 RN7SL274P-201ENST00000492268 272 ntBASIC1.94□□□□□ -2.1
CCDC28AQ8IWP9 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.94□□□□□ -2.1
CCDC28AQ8IWP9 AC110588.1-201ENST00000559699 137 ntBASIC1.94□□□□□ -2.1
CCDC28AQ8IWP9 AC005000.2-201ENST00000605468 310 ntBASIC1.94□□□□□ -2.1
CCDC28AQ8IWP9 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
CCDC28AQ8IWP9 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 229.8 ms