Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC5.05□□□□□ -1.6
CCDC61Q9Y6R9 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC61Q9Y6R9 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC61Q9Y6R9 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC61Q9Y6R9 AC093831.2-201ENST00000624393 3427 ntBASIC5.04□□□□□ -1.6
CCDC61Q9Y6R9 SNORD14E-201ENST00000364009 85 ntBASIC5.04□□□□□ -1.6
CCDC61Q9Y6R9 RNU1-33P-201ENST00000364249 162 ntBASIC5.04□□□□□ -1.6
CCDC61Q9Y6R9 RNA5SP310-201ENST00000459084 116 ntBASIC5.04□□□□□ -1.6
CCDC61Q9Y6R9 AL358944.1-201ENST00000528537 144 ntBASIC5.04□□□□□ -1.6
CCDC61Q9Y6R9 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC61Q9Y6R9 AC090115.4-201ENST00000609970 188 ntBASIC5.04□□□□□ -1.6
CCDC61Q9Y6R9 AL512310.12-203ENST00000640543 90 ntBASIC5.04□□□□□ -1.6
CCDC61Q9Y6R9 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
CCDC61Q9Y6R9 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC61Q9Y6R9 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC61Q9Y6R9 RNU6-743P-201ENST00000364151 106 ntBASIC5.03□□□□□ -1.6
CCDC61Q9Y6R9 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
CCDC61Q9Y6R9 HMGN2P8-201ENST00000391458 268 ntBASIC5.03□□□□□ -1.6
CCDC61Q9Y6R9 AL627390.1-201ENST00000396055 340 ntBASIC5.03□□□□□ -1.6
CCDC61Q9Y6R9 RNU6-1186P-201ENST00000410429 97 ntBASIC5.03□□□□□ -1.6
CCDC61Q9Y6R9 RN7SKP177-201ENST00000410567 355 ntBASIC5.03□□□□□ -1.6
CCDC61Q9Y6R9 AC097463.2-201ENST00000421074 142 ntBASIC5.03□□□□□ -1.6
CCDC61Q9Y6R9 AC087499.4-201ENST00000448505 178 ntBASIC5.03□□□□□ -1.6
CCDC61Q9Y6R9 AC008011.1-201ENST00000545989 227 ntBASIC5.03□□□□□ -1.6
CCDC61Q9Y6R9 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC61Q9Y6R9 MIR3651-201ENST00000630427 90 ntBASIC5.03□□□□□ -1.6
CCDC61Q9Y6R9 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC61Q9Y6R9 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC61Q9Y6R9 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC61Q9Y6R9 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC61Q9Y6R9 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC61Q9Y6R9 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC61Q9Y6R9 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC61Q9Y6R9 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC61Q9Y6R9 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC61Q9Y6R9 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC61Q9Y6R9 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC5.02□□□□□ -1.61
CCDC61Q9Y6R9 RNU6-457P-201ENST00000363999 107 ntBASIC5.02□□□□□ -1.61
CCDC61Q9Y6R9 MIR522-201ENST00000385071 87 ntBASIC5.02□□□□□ -1.61
CCDC61Q9Y6R9 SNORD77B-201ENST00000391112 67 ntBASIC5.02□□□□□ -1.61
CCDC61Q9Y6R9 Y_RNA.609-201ENST00000410669 89 ntBASIC5.02□□□□□ -1.61
CCDC61Q9Y6R9 SNX2P2-201ENST00000424553 323 ntBASIC5.02□□□□□ -1.61
CCDC61Q9Y6R9 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC5.02□□□□□ -1.61
CCDC61Q9Y6R9 AP001486.1-201ENST00000463339 476 ntBASIC5.02□□□□□ -1.61
CCDC61Q9Y6R9 RN7SL601P-201ENST00000471221 293 ntBASIC5.02□□□□□ -1.61
CCDC61Q9Y6R9 SNORA70.18-201ENST00000516696 98 ntBASIC5.02□□□□□ -1.61
CCDC61Q9Y6R9 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC5.02□□□□□ -1.61
CCDC61Q9Y6R9 MIR7851-201ENST00000610611 160 ntBASIC5.02□□□□□ -1.61
CCDC61Q9Y6R9 PCNP-208ENST00000627393 136 ntTSL 2 BASIC5.02□□□□□ -1.61
CCDC61Q9Y6R9 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
CCDC61Q9Y6R9 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC5.01□□□□□ -1.61
CCDC61Q9Y6R9 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC5.01□□□□□ -1.61
CCDC61Q9Y6R9 MIR342-201ENST00000362212 99 ntBASIC5.01□□□□□ -1.61
CCDC61Q9Y6R9 RNA5SP104-201ENST00000410989 118 ntBASIC5.01□□□□□ -1.61
CCDC61Q9Y6R9 BX510359.1-201ENST00000456973 237 ntBASIC5.01□□□□□ -1.61
CCDC61Q9Y6R9 RPL32P34-201ENST00000486380 400 ntBASIC5.01□□□□□ -1.61
CCDC61Q9Y6R9 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC5.01□□□□□ -1.61
CCDC61Q9Y6R9 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC61Q9Y6R9 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC61Q9Y6R9 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC5.01□□□□□ -1.61
CCDC61Q9Y6R9 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
CCDC61Q9Y6R9 AC091564.4-201ENST00000533934 2194 ntBASIC5.01□□□□□ -1.61
CCDC61Q9Y6R9 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
CCDC61Q9Y6R9 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC61Q9Y6R9 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC61Q9Y6R9 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC61Q9Y6R9 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC61Q9Y6R9 SNORA1.1-201ENST00000364671 133 ntBASIC5□□□□□ -1.61
CCDC61Q9Y6R9 Y_RNA.267-201ENST00000364679 109 ntBASIC5□□□□□ -1.61
CCDC61Q9Y6R9 AC025750.2-201ENST00000442609 450 ntBASIC5□□□□□ -1.61
CCDC61Q9Y6R9 RNU7-23P-201ENST00000459465 62 ntBASIC5□□□□□ -1.61
CCDC61Q9Y6R9 S100A11P1-201ENST00000477525 312 ntBASIC5□□□□□ -1.61
CCDC61Q9Y6R9 RNU7-99P-201ENST00000516271 62 ntBASIC5□□□□□ -1.61
CCDC61Q9Y6R9 FAS-AS1.1-201ENST00000615327 126 ntBASIC5□□□□□ -1.61
CCDC61Q9Y6R9 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC5□□□□□ -1.61
CCDC61Q9Y6R9 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC61Q9Y6R9 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
CCDC61Q9Y6R9 USP8P1-201ENST00000494673 3183 ntBASIC5□□□□□ -1.61
CCDC61Q9Y6R9 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC4.99□□□□□ -1.61
CCDC61Q9Y6R9 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.99□□□□□ -1.61
CCDC61Q9Y6R9 RNA5SP189-201ENST00000364920 115 ntBASIC4.99□□□□□ -1.61
CCDC61Q9Y6R9 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC61Q9Y6R9 RAB6C-AS1-202ENST00000433431 123 ntBASIC4.99□□□□□ -1.61
CCDC61Q9Y6R9 SNORA4.4-201ENST00000515921 135 ntBASIC4.99□□□□□ -1.61
CCDC61Q9Y6R9 RNU6-341P-201ENST00000516973 96 ntBASIC4.99□□□□□ -1.61
CCDC61Q9Y6R9 AL110115.1-201ENST00000614396 364 ntBASIC4.99□□□□□ -1.61
CCDC61Q9Y6R9 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
CCDC61Q9Y6R9 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC4.99□□□□□ -1.61
CCDC61Q9Y6R9 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC61Q9Y6R9 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.99□□□□□ -1.61
CCDC61Q9Y6R9 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC61Q9Y6R9 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC61Q9Y6R9 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC61Q9Y6R9 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC61Q9Y6R9 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC4.98□□□□□ -1.61
CCDC61Q9Y6R9 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
CCDC61Q9Y6R9 RNU6-268P-201ENST00000364174 107 ntBASIC4.98□□□□□ -1.61
CCDC61Q9Y6R9 RNA5SP120-201ENST00000410900 112 ntBASIC4.98□□□□□ -1.61
CCDC61Q9Y6R9 AC005326.1-201ENST00000429197 123 ntBASIC4.98□□□□□ -1.61
CCDC61Q9Y6R9 HMGN2P34-201ENST00000437647 269 ntBASIC4.98□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 212.1 ms