Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RNA5SP354-201ENST00000391247 136 ntBASIC3.45□□□□□ -1.86
CCDC39Q9UFE4 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.45□□□□□ -1.86
CCDC39Q9UFE4 RPS29P6-201ENST00000438196 145 ntBASIC3.45□□□□□ -1.86
CCDC39Q9UFE4 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC39Q9UFE4 RN7SL20P-201ENST00000488827 297 ntBASIC3.45□□□□□ -1.86
CCDC39Q9UFE4 RNU2-44P-201ENST00000516795 194 ntBASIC3.45□□□□□ -1.86
CCDC39Q9UFE4 AP003327.1-201ENST00000529684 127 ntBASIC3.45□□□□□ -1.86
CCDC39Q9UFE4 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC39Q9UFE4 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC39Q9UFE4 AP001318.4-201ENST00000616637 121 ntBASIC3.45□□□□□ -1.86
CCDC39Q9UFE4 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC39Q9UFE4 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC39Q9UFE4 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC39Q9UFE4 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC39Q9UFE4 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC39Q9UFE4 AL596211.1-201ENST00000569873 2277 ntBASIC3.44□□□□□ -1.86
CCDC39Q9UFE4 RNU1-105P-201ENST00000363470 161 ntBASIC3.44□□□□□ -1.86
CCDC39Q9UFE4 Y_RNA.281-201ENST00000364774 94 ntBASIC3.44□□□□□ -1.86
CCDC39Q9UFE4 RNU6-1080P-201ENST00000383982 107 ntBASIC3.44□□□□□ -1.86
CCDC39Q9UFE4 SNORA72-201ENST00000384339 132 ntBASIC3.44□□□□□ -1.86
CCDC39Q9UFE4 MIR548B-201ENST00000385247 97 ntBASIC3.44□□□□□ -1.86
CCDC39Q9UFE4 SNORD67-201ENST00000390833 111 ntBASIC3.44□□□□□ -1.86
CCDC39Q9UFE4 RNU2-55P-201ENST00000411146 174 ntBASIC3.44□□□□□ -1.86
CCDC39Q9UFE4 AL358232.1-201ENST00000448030 501 ntBASIC3.44□□□□□ -1.86
CCDC39Q9UFE4 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.44□□□□□ -1.86
CCDC39Q9UFE4 RNU6-412P-201ENST00000516434 106 ntBASIC3.44□□□□□ -1.86
CCDC39Q9UFE4 AC018630.3-201ENST00000542637 96 ntBASIC3.44□□□□□ -1.86
CCDC39Q9UFE4 AL160236.1-201ENST00000556317 195 ntBASIC3.44□□□□□ -1.86
CCDC39Q9UFE4 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.44□□□□□ -1.86
CCDC39Q9UFE4 POLR3GP1-201ENST00000594073 261 ntBASIC3.44□□□□□ -1.86
CCDC39Q9UFE4 AC024220.1-201ENST00000603675 484 ntBASIC3.44□□□□□ -1.86
CCDC39Q9UFE4 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
CCDC39Q9UFE4 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
CCDC39Q9UFE4 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC39Q9UFE4 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.43□□□□□ -1.86
CCDC39Q9UFE4 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC39Q9UFE4 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.43□□□□□ -1.86
CCDC39Q9UFE4 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC39Q9UFE4 RNU6-766P-201ENST00000362478 107 ntBASIC3.43□□□□□ -1.86
CCDC39Q9UFE4 SNORA63.1-201ENST00000362493 131 ntBASIC3.43□□□□□ -1.86
CCDC39Q9UFE4 RNU4-15P-201ENST00000362613 141 ntBASIC3.43□□□□□ -1.86
CCDC39Q9UFE4 RNU6-1107P-201ENST00000364817 104 ntBASIC3.43□□□□□ -1.86
CCDC39Q9UFE4 RNU6-1323P-201ENST00000384025 107 ntBASIC3.43□□□□□ -1.86
CCDC39Q9UFE4 SNORD116-13-201ENST00000384408 92 ntBASIC3.43□□□□□ -1.86
CCDC39Q9UFE4 RNU6-1275P-201ENST00000391087 107 ntBASIC3.43□□□□□ -1.86
CCDC39Q9UFE4 RNA5SP496-201ENST00000391240 109 ntBASIC3.43□□□□□ -1.86
CCDC39Q9UFE4 HMGN2P32-201ENST00000444648 269 ntBASIC3.43□□□□□ -1.86
CCDC39Q9UFE4 SRIP1-201ENST00000489235 288 ntBASIC3.43□□□□□ -1.86
CCDC39Q9UFE4 RNU6-1337P-201ENST00000516525 95 ntBASIC3.43□□□□□ -1.86
CCDC39Q9UFE4 RNU6-638P-201ENST00000516582 104 ntBASIC3.43□□□□□ -1.86
CCDC39Q9UFE4 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.43□□□□□ -1.86
CCDC39Q9UFE4 AC105137.2-201ENST00000569073 466 ntBASIC3.43□□□□□ -1.86
CCDC39Q9UFE4 MIR5004-201ENST00000579078 107 ntBASIC3.43□□□□□ -1.86
CCDC39Q9UFE4 AL137843.1-201ENST00000605078 385 ntBASIC3.43□□□□□ -1.86
CCDC39Q9UFE4 AL021707.8-201ENST00000609428 183 ntBASIC3.43□□□□□ -1.86
CCDC39Q9UFE4 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
CCDC39Q9UFE4 AC069528.2-201ENST00000624849 1991 ntBASIC3.43□□□□□ -1.86
CCDC39Q9UFE4 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC39Q9UFE4 Y_RNA.40-201ENST00000362645 93 ntBASIC3.42□□□□□ -1.86
CCDC39Q9UFE4 RNU6-529P-201ENST00000363383 104 ntBASIC3.42□□□□□ -1.86
CCDC39Q9UFE4 MIR23B-201ENST00000384832 97 ntBASIC3.42□□□□□ -1.86
CCDC39Q9UFE4 RNA5SP171-201ENST00000391071 115 ntBASIC3.42□□□□□ -1.86
CCDC39Q9UFE4 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC3.42□□□□□ -1.86
CCDC39Q9UFE4 AL135786.1-201ENST00000415892 214 ntBASIC3.42□□□□□ -1.86
CCDC39Q9UFE4 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.42□□□□□ -1.86
CCDC39Q9UFE4 RNU6-437P-201ENST00000459408 95 ntBASIC3.42□□□□□ -1.86
CCDC39Q9UFE4 RNU6-1299P-201ENST00000516316 100 ntBASIC3.42□□□□□ -1.86
CCDC39Q9UFE4 HMGN2P15-201ENST00000585707 270 ntBASIC3.42□□□□□ -1.86
CCDC39Q9UFE4 AC069200.1-201ENST00000609511 323 ntBASIC3.42□□□□□ -1.86
CCDC39Q9UFE4 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.42□□□□□ -1.86
CCDC39Q9UFE4 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.42□□□□□ -1.86
CCDC39Q9UFE4 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
CCDC39Q9UFE4 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.41□□□□□ -1.86
CCDC39Q9UFE4 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
CCDC39Q9UFE4 GABRG2-229ENST00000641017 3628 ntBASIC3.41□□□□□ -1.86
CCDC39Q9UFE4 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC39Q9UFE4 MIR22-201ENST00000362190 85 ntBASIC3.41□□□□□ -1.86
CCDC39Q9UFE4 SNORD114-7-201ENST00000362520 77 ntBASIC3.41□□□□□ -1.86
CCDC39Q9UFE4 SNORA38.1-201ENST00000364172 131 ntBASIC3.41□□□□□ -1.86
CCDC39Q9UFE4 RNU4-41P-201ENST00000364426 143 ntBASIC3.41□□□□□ -1.86
CCDC39Q9UFE4 Y_RNA.328-201ENST00000365208 113 ntBASIC3.41□□□□□ -1.86
CCDC39Q9UFE4 RNU6-756P-201ENST00000383997 107 ntBASIC3.41□□□□□ -1.86
CCDC39Q9UFE4 RPL23AP7-203ENST00000449021 469 ntBASIC3.41□□□□□ -1.86
CCDC39Q9UFE4 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.41□□□□□ -1.86
CCDC39Q9UFE4 RPL23AP54-201ENST00000495129 419 ntBASIC3.41□□□□□ -1.86
CCDC39Q9UFE4 IGKV1-22-201ENST00000524313 326 ntBASIC3.41□□□□□ -1.86
CCDC39Q9UFE4 RNU6-674P-201ENST00000363831 107 ntBASIC3.4□□□□□ -1.87
CCDC39Q9UFE4 MIR767-201ENST00000390228 109 ntBASIC3.4□□□□□ -1.87
CCDC39Q9UFE4 AL133475.1-201ENST00000404414 305 ntBASIC3.4□□□□□ -1.87
CCDC39Q9UFE4 RPS29P12-201ENST00000460178 152 ntBASIC3.4□□□□□ -1.87
CCDC39Q9UFE4 RN7SL504P-201ENST00000494496 287 ntBASIC3.4□□□□□ -1.87
CCDC39Q9UFE4 PRELID2P1-201ENST00000552837 301 ntBASIC3.4□□□□□ -1.87
CCDC39Q9UFE4 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.4□□□□□ -1.87
CCDC39Q9UFE4 AL049861.1-201ENST00000603130 150 ntBASIC3.4□□□□□ -1.87
CCDC39Q9UFE4 AL022345.2-201ENST00000606307 135 ntBASIC3.4□□□□□ -1.87
CCDC39Q9UFE4 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
CCDC39Q9UFE4 AC110079.1-202ENST00000635213 138 ntBASIC3.4□□□□□ -1.87
CCDC39Q9UFE4 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.39□□□□□ -1.87
CCDC39Q9UFE4 MIR873-201ENST00000401120 77 ntBASIC3.39□□□□□ -1.87
CCDC39Q9UFE4 AL355796.1-201ENST00000406706 323 ntBASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 205.4 ms