Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 SNORD124-201ENST00000459577 104 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 RNU6-58P-201ENST00000517143 103 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 AL118558.2-201ENST00000556294 238 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 AC068790.6-201ENST00000602558 258 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 DISC2.1-201ENST00000612827 205 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 RNU6-259P-201ENST00000383999 107 ntBASIC0.6□□□□□ -2.31
SHANK3Q9BYB0 SNORD116-9-201ENST00000384000 95 ntBASIC0.6□□□□□ -2.31
SHANK3Q9BYB0 SNORD116-3-201ENST00000384287 95 ntBASIC0.6□□□□□ -2.31
SHANK3Q9BYB0 SNORD116-7-201ENST00000384404 95 ntBASIC0.6□□□□□ -2.31
SHANK3Q9BYB0 Y_RNA.490-201ENST00000384413 102 ntBASIC0.6□□□□□ -2.31
SHANK3Q9BYB0 SNORD116-5-201ENST00000384462 95 ntBASIC0.6□□□□□ -2.31
SHANK3Q9BYB0 RNU6-30P-201ENST00000384561 107 ntBASIC0.6□□□□□ -2.31
SHANK3Q9BYB0 Y_RNA.553-201ENST00000384670 102 ntBASIC0.6□□□□□ -2.31
SHANK3Q9BYB0 ZNF885P-201ENST00000420174 1098 ntBASIC0.6□□□□□ -2.31
SHANK3Q9BYB0 MTND1P5-201ENST00000517906 940 ntBASIC0.6□□□□□ -2.31
SHANK3Q9BYB0 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC0.6□□□□□ -2.31
SHANK3Q9BYB0 RNU6-1266P-201ENST00000362794 105 ntBASIC0.59□□□□□ -2.31
SHANK3Q9BYB0 RNU6-199P-201ENST00000362954 107 ntBASIC0.59□□□□□ -2.31
SHANK3Q9BYB0 RNU4-9P-201ENST00000364951 139 ntBASIC0.59□□□□□ -2.31
SHANK3Q9BYB0 MRPL42P3-201ENST00000401492 326 ntBASIC0.59□□□□□ -2.31
SHANK3Q9BYB0 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC0.59□□□□□ -2.31
SHANK3Q9BYB0 USMG5P1-201ENST00000425964 177 ntBASIC0.59□□□□□ -2.31
SHANK3Q9BYB0 SEPT14P3-201ENST00000439401 183 ntBASIC0.59□□□□□ -2.31
SHANK3Q9BYB0 DAP3P1-201ENST00000441522 278 ntBASIC0.59□□□□□ -2.31
SHANK3Q9BYB0 AL732372.2-207ENST00000445840 183 ntBASIC0.59□□□□□ -2.31
SHANK3Q9BYB0 SEPT14P2-201ENST00000453405 183 ntBASIC0.59□□□□□ -2.31
SHANK3Q9BYB0 RPL39P39-201ENST00000455840 151 ntBASIC0.59□□□□□ -2.31
SHANK3Q9BYB0 RNU7-187P-201ENST00000458985 68 ntBASIC0.59□□□□□ -2.31
SHANK3Q9BYB0 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.59□□□□□ -2.31
SHANK3Q9BYB0 AC010424.1-201ENST00000506336 297 ntBASIC0.59□□□□□ -2.31
SHANK3Q9BYB0 SEPT14P4-201ENST00000513445 186 ntBASIC0.59□□□□□ -2.31
SHANK3Q9BYB0 ACA59.1-201ENST00000515966 143 ntBASIC0.59□□□□□ -2.31
SHANK3Q9BYB0 RNU7-28P-201ENST00000516759 62 ntBASIC0.59□□□□□ -2.31
SHANK3Q9BYB0 FO082796.1-201ENST00000523795 183 ntBASIC0.59□□□□□ -2.31
SHANK3Q9BYB0 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC0.59□□□□□ -2.31
SHANK3Q9BYB0 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.59□□□□□ -2.31
SHANK3Q9BYB0 AP000770.2-201ENST00000623694 100 ntBASIC0.59□□□□□ -2.31
SHANK3Q9BYB0 AC008873.1-201ENST00000625051 138 ntBASIC0.59□□□□□ -2.31
SHANK3Q9BYB0 RNU6-873P-201ENST00000363833 107 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 MIR517A-201ENST00000385001 87 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 RNU6-910P-201ENST00000390844 107 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 MTCYBP4-201ENST00000401524 249 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 MTCO2P7-201ENST00000446518 666 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 MTND4P18-201ENST00000447010 465 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 AC079354.2-201ENST00000453523 154 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 AC010486.3-201ENST00000511602 785 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 AC091178.2-201ENST00000584401 117 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 Y_RNA.231-201ENST00000364358 102 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 SNORD114-24-201ENST00000365029 72 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 RNU6-505P-201ENST00000384427 107 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 RNA5SP109-201ENST00000391010 116 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 MRPS10P2-201ENST00000431226 381 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 MTCO1P19-201ENST00000443487 500 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 AC098826.2-201ENST00000452011 651 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 AC048334.1-201ENST00000477975 159 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 AC083904.1-201ENST00000487828 231 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 AL133373.1-201ENST00000497098 94 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 AC074133.1-201ENST00000515696 183 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 RNU7-175P-201ENST00000515915 61 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 OSBPL9P5-201ENST00000542581 171 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 RPL21P9-201ENST00000556149 474 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 AC136932.1-201ENST00000574771 208 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 PIGPP4-201ENST00000584447 307 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 MIR4438-201ENST00000585271 93 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 NBR2-204ENST00000587322 63 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 RN7SKP299-201ENST00000606679 301 ntBASIC0.58□□□□□ -2.32
SHANK3Q9BYB0 MTND5P26-201ENST00000426018 1752 ntBASIC0.57□□□□□ -2.32
SHANK3Q9BYB0 SNORD50.1-201ENST00000362987 71 ntBASIC0.57□□□□□ -2.32
SHANK3Q9BYB0 MIR608-201ENST00000384820 100 ntBASIC0.57□□□□□ -2.32
SHANK3Q9BYB0 MIR660-201ENST00000385235 97 ntBASIC0.57□□□□□ -2.32
SHANK3Q9BYB0 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC0.57□□□□□ -2.32
SHANK3Q9BYB0 SNORD12-201ENST00000391002 90 ntBASIC0.57□□□□□ -2.32
SHANK3Q9BYB0 AL451046.2-201ENST00000403074 277 ntBASIC0.57□□□□□ -2.32
SHANK3Q9BYB0 RNU6-733P-201ENST00000410759 104 ntBASIC0.57□□□□□ -2.32
SHANK3Q9BYB0 AC114737.2-201ENST00000421583 173 ntBASIC0.57□□□□□ -2.32
SHANK3Q9BYB0 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC0.57□□□□□ -2.32
SHANK3Q9BYB0 MTND1P26-201ENST00000440488 538 ntBASIC0.57□□□□□ -2.32
SHANK3Q9BYB0 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.57□□□□□ -2.32
SHANK3Q9BYB0 LINC01399-202ENST00000458450 244 ntBASIC0.57□□□□□ -2.32
SHANK3Q9BYB0 SNORA31.10-201ENST00000516482 106 ntBASIC0.57□□□□□ -2.32
SHANK3Q9BYB0 SCARNA16.2-201ENST00000516520 172 ntBASIC0.57□□□□□ -2.32
SHANK3Q9BYB0 Y_RNA.688-201ENST00000516565 95 ntBASIC0.57□□□□□ -2.32
SHANK3Q9BYB0 ZNF519P2-201ENST00000557032 169 ntBASIC0.57□□□□□ -2.32
SHANK3Q9BYB0 AC245008.1-201ENST00000608123 476 ntBASIC0.57□□□□□ -2.32
SHANK3Q9BYB0 SNORD3E-202ENST00000627253 216 ntBASIC0.57□□□□□ -2.32
SHANK3Q9BYB0 Y_RNA.319-201ENST00000365138 92 ntBASIC0.56□□□□□ -2.32
SHANK3Q9BYB0 RNU6-596P-201ENST00000365395 98 ntBASIC0.56□□□□□ -2.32
SHANK3Q9BYB0 Y_RNA.372-201ENST00000365599 102 ntBASIC0.56□□□□□ -2.32
SHANK3Q9BYB0 Y_RNA.373-201ENST00000365600 103 ntBASIC0.56□□□□□ -2.32
SHANK3Q9BYB0 RNU6-1119P-201ENST00000384349 108 ntBASIC0.56□□□□□ -2.32
SHANK3Q9BYB0 DEFB108C-201ENST00000400154 252 ntBASIC0.56□□□□□ -2.32
SHANK3Q9BYB0 RNU6-1068P-201ENST00000410958 103 ntBASIC0.56□□□□□ -2.32
SHANK3Q9BYB0 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC0.56□□□□□ -2.32
SHANK3Q9BYB0 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC0.56□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 241.6 ms