Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SNORA33.2-201ENST00000365413 134 ntBASIC1.64□□□□□ -2.15
NKX3-1Q99801 RNU6-937P-201ENST00000384325 106 ntBASIC1.64□□□□□ -2.15
NKX3-1Q99801 AC019129.1-201ENST00000403786 261 ntBASIC1.64□□□□□ -2.15
NKX3-1Q99801 RNA5SP100-201ENST00000410903 110 ntBASIC1.64□□□□□ -2.15
NKX3-1Q99801 RNA5SP59-201ENST00000410922 110 ntBASIC1.64□□□□□ -2.15
NKX3-1Q99801 AL445685.2-201ENST00000422551 342 ntBASIC1.64□□□□□ -2.15
NKX3-1Q99801 AC245047.4-201ENST00000433189 144 ntBASIC1.64□□□□□ -2.15
NKX3-1Q99801 AC005002.2-201ENST00000438228 269 ntBASIC1.64□□□□□ -2.15
NKX3-1Q99801 AC010409.1-201ENST00000487382 476 ntBASIC1.64□□□□□ -2.15
NKX3-1Q99801 RNU6-1046P-201ENST00000516538 107 ntBASIC1.64□□□□□ -2.15
NKX3-1Q99801 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.64□□□□□ -2.15
NKX3-1Q99801 AC084364.2-201ENST00000546924 395 ntBASIC1.64□□□□□ -2.15
NKX3-1Q99801 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.64□□□□□ -2.15
NKX3-1Q99801 AC005176.2-201ENST00000596933 147 ntBASIC1.64□□□□□ -2.15
NKX3-1Q99801 AL353149.1-201ENST00000610667 244 ntBASIC1.64□□□□□ -2.15
NKX3-1Q99801 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.64□□□□□ -2.15
NKX3-1Q99801 AL773524.1-201ENST00000614065 229 ntBASIC1.64□□□□□ -2.15
NKX3-1Q99801 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.64□□□□□ -2.15
NKX3-1Q99801 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.64□□□□□ -2.15
NKX3-1Q99801 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.64□□□□□ -2.15
NKX3-1Q99801 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.63□□□□□ -2.15
NKX3-1Q99801 Y_RNA.124-201ENST00000363339 93 ntBASIC1.63□□□□□ -2.15
NKX3-1Q99801 Y_RNA.158-201ENST00000363651 101 ntBASIC1.63□□□□□ -2.15
NKX3-1Q99801 Y_RNA.326-201ENST00000365176 113 ntBASIC1.63□□□□□ -2.15
NKX3-1Q99801 SNORA8-201ENST00000384574 139 ntBASIC1.63□□□□□ -2.15
NKX3-1Q99801 HMGN2P19-201ENST00000425149 265 ntBASIC1.63□□□□□ -2.15
NKX3-1Q99801 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.63□□□□□ -2.15
NKX3-1Q99801 U8.20-201ENST00000459445 131 ntBASIC1.63□□□□□ -2.15
NKX3-1Q99801 RNA5SP57-201ENST00000459463 123 ntBASIC1.63□□□□□ -2.15
NKX3-1Q99801 Y_RNA.715-201ENST00000517082 110 ntBASIC1.63□□□□□ -2.15
NKX3-1Q99801 RNU2-12P-201ENST00000517216 168 ntBASIC1.63□□□□□ -2.15
NKX3-1Q99801 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.63□□□□□ -2.15
NKX3-1Q99801 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.63□□□□□ -2.15
NKX3-1Q99801 MIR4524B-201ENST00000581569 115 ntBASIC1.63□□□□□ -2.15
NKX3-1Q99801 RAC1P9-201ENST00000604990 392 ntBASIC1.63□□□□□ -2.15
NKX3-1Q99801 RNU4-50P-201ENST00000364361 141 ntBASIC1.62□□□□□ -2.15
NKX3-1Q99801 Y_RNA.243-201ENST00000364481 109 ntBASIC1.62□□□□□ -2.15
NKX3-1Q99801 SNORA72.2-201ENST00000365028 127 ntBASIC1.62□□□□□ -2.15
NKX3-1Q99801 RNU6-1310P-201ENST00000384153 107 ntBASIC1.62□□□□□ -2.15
NKX3-1Q99801 Y_RNA.446-201ENST00000384178 104 ntBASIC1.62□□□□□ -2.15
NKX3-1Q99801 RNU6-101P-201ENST00000410323 104 ntBASIC1.62□□□□□ -2.15
NKX3-1Q99801 RNU6-1186P-201ENST00000410429 97 ntBASIC1.62□□□□□ -2.15
NKX3-1Q99801 AC113618.1-201ENST00000416747 285 ntBASIC1.62□□□□□ -2.15
NKX3-1Q99801 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.62□□□□□ -2.15
NKX3-1Q99801 RPL23AP42-201ENST00000471152 471 ntBASIC1.62□□□□□ -2.15
NKX3-1Q99801 RPL23AP63-201ENST00000498752 471 ntBASIC1.62□□□□□ -2.15
NKX3-1Q99801 AC010598.1-201ENST00000510378 103 ntBASIC1.62□□□□□ -2.15
NKX3-1Q99801 RNU7-128P-201ENST00000517247 62 ntBASIC1.62□□□□□ -2.15
NKX3-1Q99801 AC136932.1-201ENST00000574771 208 ntBASIC1.62□□□□□ -2.15
NKX3-1Q99801 MIR4299-201ENST00000577899 72 ntBASIC1.62□□□□□ -2.15
NKX3-1Q99801 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.62□□□□□ -2.15
NKX3-1Q99801 Y_RNA.772-201ENST00000606692 102 ntBASIC1.62□□□□□ -2.15
NKX3-1Q99801 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.62□□□□□ -2.15
NKX3-1Q99801 U1.36-201ENST00000620684 176 ntBASIC1.62□□□□□ -2.15
NKX3-1Q99801 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
NKX3-1Q99801 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.61□□□□□ -2.15
NKX3-1Q99801 AP006437.1-201ENST00000641440 3685 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 RNU6-1266P-201ENST00000362794 105 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 Y_RNA.105-201ENST00000363182 111 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 RNU6-112P-201ENST00000363599 104 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 SNORD115-30-201ENST00000364117 82 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 RNU6-1175P-201ENST00000365200 107 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 Y_RNA.439-201ENST00000384119 94 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 RNU6-296P-201ENST00000384608 107 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 Y_RNA.551-201ENST00000384661 102 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 RNU6-1011P-201ENST00000384668 107 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 MIR583-201ENST00000384846 75 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 MIR1252-201ENST00000408861 65 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 RNU4-30P-201ENST00000410245 143 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 RNU2-54P-201ENST00000410299 190 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 CST2P1-201ENST00000425770 87 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 AL445646.1-201ENST00000431784 216 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 AL591806.2-201ENST00000433122 173 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 RPS27P22-201ENST00000478056 241 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 AL163195.1-201ENST00000496941 348 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 AC108210.2-201ENST00000503681 201 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
NKX3-1Q99801 RNU6-897P-201ENST00000517135 105 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 AC022616.4-201ENST00000522985 181 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 AC113195.1-201ENST00000579952 141 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 MIR4423-201ENST00000580922 80 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 AC022441.3-201ENST00000605737 136 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 AC005828.6-201ENST00000606610 232 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 U6.73-201ENST00000619194 103 ntBASIC1.61□□□□□ -2.15
NKX3-1Q99801 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
NKX3-1Q99801 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
NKX3-1Q99801 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
NKX3-1Q99801 AL356292.1-201ENST00000283110 373 ntBASIC1.6□□□□□ -2.15
NKX3-1Q99801 Y_RNA.26-201ENST00000362539 101 ntBASIC1.6□□□□□ -2.15
NKX3-1Q99801 SNORA27.1-201ENST00000362604 124 ntBASIC1.6□□□□□ -2.15
NKX3-1Q99801 SNORD81.1-201ENST00000363064 77 ntBASIC1.6□□□□□ -2.15
NKX3-1Q99801 Y_RNA.153-201ENST00000363615 91 ntBASIC1.6□□□□□ -2.15
NKX3-1Q99801 SNORA16.1-201ENST00000364597 132 ntBASIC1.6□□□□□ -2.15
NKX3-1Q99801 RNU6-407P-201ENST00000365280 104 ntBASIC1.6□□□□□ -2.15
NKX3-1Q99801 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.6□□□□□ -2.15
NKX3-1Q99801 Y_RNA.455-201ENST00000384230 98 ntBASIC1.6□□□□□ -2.15
NKX3-1Q99801 Y_RNA.526-201ENST00000384572 110 ntBASIC1.6□□□□□ -2.15
NKX3-1Q99801 Y_RNA.570-201ENST00000384750 101 ntBASIC1.6□□□□□ -2.15
NKX3-1Q99801 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.6□□□□□ -2.15
NKX3-1Q99801 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.6□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 169.8 ms