Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RPS27P21-201ENST00000486977 252 ntBASIC2.14□□□□□ -2.07
CCDC28AQ8IWP9 RPS29P21-201ENST00000496272 170 ntBASIC2.14□□□□□ -2.07
CCDC28AQ8IWP9 AC008885.1-201ENST00000514930 301 ntBASIC2.14□□□□□ -2.07
CCDC28AQ8IWP9 Y_RNA.668-201ENST00000516233 93 ntBASIC2.14□□□□□ -2.07
CCDC28AQ8IWP9 RNU6-191P-201ENST00000516295 94 ntBASIC2.14□□□□□ -2.07
CCDC28AQ8IWP9 RNU7-128P-201ENST00000517247 62 ntBASIC2.14□□□□□ -2.07
CCDC28AQ8IWP9 RPL21P9-201ENST00000556149 474 ntBASIC2.14□□□□□ -2.07
CCDC28AQ8IWP9 AC004817.2-201ENST00000561794 651 ntBASIC2.14□□□□□ -2.07
CCDC28AQ8IWP9 MIR4448-201ENST00000584360 86 ntBASIC2.14□□□□□ -2.07
CCDC28AQ8IWP9 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.14□□□□□ -2.07
CCDC28AQ8IWP9 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
CCDC28AQ8IWP9 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC28AQ8IWP9 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
CCDC28AQ8IWP9 AC096644.4-201ENST00000563417 2912 ntBASIC2.13□□□□□ -2.07
CCDC28AQ8IWP9 AL356292.1-201ENST00000283110 373 ntBASIC2.13□□□□□ -2.07
CCDC28AQ8IWP9 Y_RNA.341-201ENST00000365341 102 ntBASIC2.13□□□□□ -2.07
CCDC28AQ8IWP9 RNU6-117P-201ENST00000365415 107 ntBASIC2.13□□□□□ -2.07
CCDC28AQ8IWP9 Y_RNA.456-201ENST00000384232 111 ntBASIC2.13□□□□□ -2.07
CCDC28AQ8IWP9 RNU6-376P-201ENST00000384731 106 ntBASIC2.13□□□□□ -2.07
CCDC28AQ8IWP9 RNA5SP171-201ENST00000391071 115 ntBASIC2.13□□□□□ -2.07
CCDC28AQ8IWP9 OOSP1P1-201ENST00000423265 274 ntBASIC2.13□□□□□ -2.07
CCDC28AQ8IWP9 BX510359.1-201ENST00000456973 237 ntBASIC2.13□□□□□ -2.07
CCDC28AQ8IWP9 RPS26P45-201ENST00000471748 340 ntBASIC2.13□□□□□ -2.07
CCDC28AQ8IWP9 SCARNA24.2-201ENST00000516968 130 ntBASIC2.13□□□□□ -2.07
CCDC28AQ8IWP9 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC28AQ8IWP9 AC002984.1-201ENST00000591692 448 ntBASIC2.13□□□□□ -2.07
CCDC28AQ8IWP9 AL512605.2-201ENST00000592972 256 ntBASIC2.13□□□□□ -2.07
CCDC28AQ8IWP9 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.13□□□□□ -2.07
CCDC28AQ8IWP9 U6.108-201ENST00000637764 58 ntBASIC2.13□□□□□ -2.07
CCDC28AQ8IWP9 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
CCDC28AQ8IWP9 AC008555.8-201ENST00000623602 2168 ntBASIC2.13□□□□□ -2.07
CCDC28AQ8IWP9 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
CCDC28AQ8IWP9 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
CCDC28AQ8IWP9 SNORD46.1-201ENST00000364139 104 ntBASIC2.12□□□□□ -2.07
CCDC28AQ8IWP9 SNORA16B-201ENST00000364674 135 ntBASIC2.12□□□□□ -2.07
CCDC28AQ8IWP9 Y_RNA.368-201ENST00000365547 113 ntBASIC2.12□□□□□ -2.07
CCDC28AQ8IWP9 SNORA48.5-201ENST00000391143 135 ntBASIC2.12□□□□□ -2.07
CCDC28AQ8IWP9 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.12□□□□□ -2.07
CCDC28AQ8IWP9 RNU6ATAC10P-201ENST00000408635 111 ntBASIC2.12□□□□□ -2.07
CCDC28AQ8IWP9 AL513328.1-201ENST00000446460 224 ntBASIC2.12□□□□□ -2.07
CCDC28AQ8IWP9 SNORD127-201ENST00000458892 86 ntBASIC2.12□□□□□ -2.07
CCDC28AQ8IWP9 LARP7P3-201ENST00000579888 337 ntBASIC2.12□□□□□ -2.07
CCDC28AQ8IWP9 AC073413.2-201ENST00000604332 360 ntBASIC2.12□□□□□ -2.07
CCDC28AQ8IWP9 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.12□□□□□ -2.07
CCDC28AQ8IWP9 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.12□□□□□ -2.07
CCDC28AQ8IWP9 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
CCDC28AQ8IWP9 AL359851.1-201ENST00000569460 4997 ntBASIC2.11□□□□□ -2.07
CCDC28AQ8IWP9 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.11□□□□□ -2.07
CCDC28AQ8IWP9 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.11□□□□□ -2.07
CCDC28AQ8IWP9 RNU2-40P-201ENST00000410833 196 ntBASIC2.11□□□□□ -2.07
CCDC28AQ8IWP9 RNU2-38P-201ENST00000410856 79 ntBASIC2.11□□□□□ -2.07
CCDC28AQ8IWP9 COTL1P1-201ENST00000422309 375 ntBASIC2.11□□□□□ -2.07
CCDC28AQ8IWP9 AC245047.4-201ENST00000433189 144 ntBASIC2.11□□□□□ -2.07
CCDC28AQ8IWP9 AC107083.1-201ENST00000439643 279 ntBASIC2.11□□□□□ -2.07
CCDC28AQ8IWP9 RNU7-94P-201ENST00000459576 63 ntBASIC2.11□□□□□ -2.07
CCDC28AQ8IWP9 RPL36AP21-201ENST00000490372 323 ntBASIC2.11□□□□□ -2.07
CCDC28AQ8IWP9 AC091959.1-201ENST00000495857 238 ntBASIC2.11□□□□□ -2.07
CCDC28AQ8IWP9 AL163195.1-201ENST00000496941 348 ntBASIC2.11□□□□□ -2.07
CCDC28AQ8IWP9 AC022080.3-201ENST00000544433 482 ntBASIC2.11□□□□□ -2.07
CCDC28AQ8IWP9 AC084364.2-201ENST00000546924 395 ntBASIC2.11□□□□□ -2.07
CCDC28AQ8IWP9 SUB1P4-201ENST00000566062 339 ntBASIC2.11□□□□□ -2.07
CCDC28AQ8IWP9 MIR5195-201ENST00000583555 115 ntBASIC2.11□□□□□ -2.07
CCDC28AQ8IWP9 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.11□□□□□ -2.07
CCDC28AQ8IWP9 AC062037.2-201ENST00000610137 73 ntBASIC2.11□□□□□ -2.07
CCDC28AQ8IWP9 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.11□□□□□ -2.07
CCDC28AQ8IWP9 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.11□□□□□ -2.07
CCDC28AQ8IWP9 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.11□□□□□ -2.07
CCDC28AQ8IWP9 ZNF702P-202ENST00000434269 1966 ntBASIC2.1□□□□□ -2.07
CCDC28AQ8IWP9 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.1□□□□□ -2.07
CCDC28AQ8IWP9 RPS20P10-201ENST00000451209 253 ntBASIC2.1□□□□□ -2.07
CCDC28AQ8IWP9 RNU6-1132P-201ENST00000459214 107 ntBASIC2.1□□□□□ -2.07
CCDC28AQ8IWP9 AC008413.1-201ENST00000511864 177 ntBASIC2.1□□□□□ -2.07
CCDC28AQ8IWP9 RNA5SP341-201ENST00000516261 117 ntBASIC2.1□□□□□ -2.07
CCDC28AQ8IWP9 RNU6-63P-201ENST00000516690 95 ntBASIC2.1□□□□□ -2.07
CCDC28AQ8IWP9 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.1□□□□□ -2.07
CCDC28AQ8IWP9 AC007179.3-201ENST00000604976 235 ntBASIC2.1□□□□□ -2.07
CCDC28AQ8IWP9 U2.14-201ENST00000615943 113 ntBASIC2.1□□□□□ -2.07
CCDC28AQ8IWP9 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.1□□□□□ -2.07
CCDC28AQ8IWP9 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
CCDC28AQ8IWP9 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
CCDC28AQ8IWP9 AC018630.2-201ENST00000534866 2403 ntBASIC2.09□□□□□ -2.07
CCDC28AQ8IWP9 UBE2WP1-201ENST00000362030 340 ntBASIC2.09□□□□□ -2.07
CCDC28AQ8IWP9 Y_RNA.14-201ENST00000362415 103 ntBASIC2.09□□□□□ -2.07
CCDC28AQ8IWP9 RNA5SP374-201ENST00000362939 125 ntBASIC2.09□□□□□ -2.07
CCDC28AQ8IWP9 Y_RNA.310-201ENST00000365063 113 ntBASIC2.09□□□□□ -2.07
CCDC28AQ8IWP9 SNORD116-13-201ENST00000384408 92 ntBASIC2.09□□□□□ -2.07
CCDC28AQ8IWP9 AL512604.1-201ENST00000404812 257 ntBASIC2.09□□□□□ -2.07
CCDC28AQ8IWP9 AL158823.1-201ENST00000418441 478 ntBASIC2.09□□□□□ -2.07
CCDC28AQ8IWP9 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.09□□□□□ -2.07
CCDC28AQ8IWP9 AL162725.1-201ENST00000435405 301 ntBASIC2.09□□□□□ -2.07
CCDC28AQ8IWP9 RPL39P38-201ENST00000467018 153 ntBASIC2.09□□□□□ -2.07
CCDC28AQ8IWP9 SNORA27.4-201ENST00000516650 95 ntBASIC2.09□□□□□ -2.07
CCDC28AQ8IWP9 MIR514B-201ENST00000516774 80 ntBASIC2.09□□□□□ -2.07
CCDC28AQ8IWP9 RN7SKP57-201ENST00000517248 293 ntBASIC2.09□□□□□ -2.07
CCDC28AQ8IWP9 AC136628.3-201ENST00000521868 290 ntBASIC2.09□□□□□ -2.07
CCDC28AQ8IWP9 AC012433.1-201ENST00000588916 398 ntBASIC2.09□□□□□ -2.07
CCDC28AQ8IWP9 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC2.09□□□□□ -2.07
CCDC28AQ8IWP9 AC004832.4-201ENST00000608952 331 ntBASIC2.09□□□□□ -2.07
CCDC28AQ8IWP9 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC2.09□□□□□ -2.07
CCDC28AQ8IWP9 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 276.3 ms