Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 HMGN2P32-201ENST00000444648 269 ntBASIC4.12□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RPL23AP54-201ENST00000495129 419 ntBASIC4.12□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RNA5SP24-201ENST00000516478 95 ntBASIC4.12□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RNU2-44P-201ENST00000516795 194 ntBASIC4.12□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC4.12□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AC064859.1-201ENST00000624741 174 ntBASIC4.12□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC4.12□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AL596211.1-201ENST00000569873 2277 ntBASIC4.11□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC4.11□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 Y_RNA.85-201ENST00000363014 111 ntBASIC4.11□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 Y_RNA.163-201ENST00000363702 113 ntBASIC4.11□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 SNORA51.5-201ENST00000384126 131 ntBASIC4.11□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RNU6-49P-201ENST00000384256 107 ntBASIC4.11□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 SNORA67.2-201ENST00000384300 149 ntBASIC4.11□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 SNORA72-201ENST00000384339 132 ntBASIC4.11□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 MIR873-201ENST00000401120 77 ntBASIC4.11□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RN7SKP111-201ENST00000410349 271 ntBASIC4.11□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RPL23AP7-203ENST00000449021 469 ntBASIC4.11□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RNU6-970P-201ENST00000516312 107 ntBASIC4.11□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RNU6-1073P-201ENST00000517182 106 ntBASIC4.11□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RNU1-104P-201ENST00000517280 175 ntBASIC4.11□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AL021707.8-201ENST00000609428 183 ntBASIC4.11□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RNA5SP125-201ENST00000364843 120 ntBASIC4.1□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 5S_rRNA.2-201ENST00000391293 112 ntBASIC4.1□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RNU2-70P-201ENST00000410718 179 ntBASIC4.1□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC4.1□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AC008885.1-201ENST00000514930 301 ntBASIC4.1□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RNU6-1337P-201ENST00000516525 95 ntBASIC4.1□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 PRELID2P1-201ENST00000552837 301 ntBASIC4.1□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC4.1□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AL022345.2-201ENST00000606307 135 ntBASIC4.1□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AL138880.2-201ENST00000616214 239 ntBASIC4.1□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AC007256.1-201ENST00000392253 2765 ntBASIC4.09□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.09□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC4.09□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RNU6-1113P-201ENST00000384348 107 ntBASIC4.09□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 MIR548B-201ENST00000385247 97 ntBASIC4.09□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 SNORD12C-201ENST00000386307 89 ntBASIC4.09□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AL353705.1-201ENST00000433468 480 ntBASIC4.09□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 SNORD108-201ENST00000459332 71 ntBASIC4.09□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AC107626.1-201ENST00000471084 183 ntBASIC4.09□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RNA5SP217-201ENST00000515959 91 ntBASIC4.09□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 RNA5SP367-201ENST00000516557 118 ntBASIC4.09□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AC007012.1-201ENST00000567192 175 ntBASIC4.09□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AC005972.2-201ENST00000604690 348 ntBASIC4.09□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 AC009831.4-201ENST00000620744 325 ntBASIC4.09□□□□□ -1.75
SENP3-EIF4A1A0A087X0R7 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 Y_RNA.124-201ENST00000363339 93 ntBASIC4.08□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 RPS12P18-201ENST00000442381 270 ntBASIC4.08□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 RN7SL75P-201ENST00000461926 281 ntBASIC4.08□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC4.08□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 SNORA18.4-201ENST00000516440 124 ntBASIC4.08□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 Y_RNA.685-201ENST00000516532 108 ntBASIC4.08□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC4.08□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 MIR3199-2-201ENST00000636243 86 ntBASIC4.08□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 AC093010.3-201ENST00000570269 15214 ntBASIC4.08□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 RNU6-508P-201ENST00000363231 103 ntBASIC4.07□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 RNU6-271P-201ENST00000363858 105 ntBASIC4.07□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 RNA5SP173-201ENST00000364857 136 ntBASIC4.07□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 SNORD116-13-201ENST00000384408 92 ntBASIC4.07□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 Y_RNA.544-201ENST00000384650 113 ntBASIC4.07□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 MIR3074-201ENST00000384885 81 ntBASIC4.07□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 AL135786.1-201ENST00000415892 214 ntBASIC4.07□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 AC245291.1-201ENST00000419501 328 ntBASIC4.07□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.07□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 AL021397.1-201ENST00000451806 248 ntBASIC4.07□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 CKS1BP2-201ENST00000497342 240 ntBASIC4.07□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 RN7SKP132-201ENST00000516001 208 ntBASIC4.07□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 RN7SKP282-201ENST00000516824 299 ntBASIC4.07□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 snoMBII-202.2-201ENST00000517263 86 ntBASIC4.07□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 AC025647.1-201ENST00000517879 253 ntBASIC4.07□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC4.07□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 AL049861.1-201ENST00000603130 150 ntBASIC4.07□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 AC097639.2-201ENST00000603159 172 ntBASIC4.07□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 AL353997.5-201ENST00000618886 171 ntBASIC4.07□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC4.07□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 RNU4-15P-201ENST00000362613 141 ntBASIC4.06□□□□□ -1.76
SENP3-EIF4A1A0A087X0R7 SNORA7.2-201ENST00000364446 145 ntBASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 167.5 ms