Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RNA5SP259-201ENST00000365541 109 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 MIR562-201ENST00000384894 95 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 Y_RNA.582-201ENST00000391023 95 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 RNU4-55P-201ENST00000410731 137 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 AC010154.1-201ENST00000425857 269 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 MTCO2P16-201ENST00000436962 677 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 PCMTD1P1-201ENST00000455560 355 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 AC025423.5-201ENST00000550230 219 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 TPRKBP2-201ENST00000565969 475 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 SNORA59B-202ENST00000578183 701 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 MIR4742-201ENST00000581069 85 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 MIR6718-201ENST00000616153 80 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 U6.73-201ENST00000619194 103 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 AL513423.1-201ENST00000621695 132 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 AC006435.5-201ENST00000624486 112 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 SCARNA4-201ENST00000629045 128 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 Y_RNA.142-201ENST00000363491 102 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 RNU1-36P-201ENST00000365130 165 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 SNORA69-201ENST00000383895 132 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 RAB28P5-201ENST00000427490 651 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 snoU13.6-201ENST00000458785 104 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 RNU7-40P-201ENST00000516397 64 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 AL158211.1-201ENST00000566763 763 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 MIR4661-201ENST00000582720 75 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 AL162413.1-201ENST00000603198 110 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 AC040896.1-201ENST00000613819 479 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 AC068137.3-201ENST00000639191 341 ntBASIC0.64□□□□□ -2.31
SHANK3Q9BYB0 RNU6-254P-201ENST00000363377 107 ntBASIC0.63□□□□□ -2.31
SHANK3Q9BYB0 RNA5SP368-201ENST00000364298 116 ntBASIC0.63□□□□□ -2.31
SHANK3Q9BYB0 RNU6-1031P-201ENST00000384773 107 ntBASIC0.63□□□□□ -2.31
SHANK3Q9BYB0 RNU6-1186P-201ENST00000410429 97 ntBASIC0.63□□□□□ -2.31
SHANK3Q9BYB0 AL353193.1-201ENST00000421444 268 ntBASIC0.63□□□□□ -2.31
SHANK3Q9BYB0 MTCO1P20-201ENST00000425366 358 ntBASIC0.63□□□□□ -2.31
SHANK3Q9BYB0 RNU7-34P-201ENST00000459394 64 ntBASIC0.63□□□□□ -2.31
SHANK3Q9BYB0 SNORA70.22-201ENST00000517160 124 ntBASIC0.63□□□□□ -2.31
SHANK3Q9BYB0 AC006362.1-201ENST00000567392 174 ntBASIC0.63□□□□□ -2.31
SHANK3Q9BYB0 AL158209.2-201ENST00000619266 216 ntBASIC0.63□□□□□ -2.31
SHANK3Q9BYB0 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC0.63□□□□□ -2.31
SHANK3Q9BYB0 AC090582.1-201ENST00000636321 199 ntBASIC0.63□□□□□ -2.31
SHANK3Q9BYB0 U6.108-201ENST00000637764 58 ntBASIC0.63□□□□□ -2.31
SHANK3Q9BYB0 AC099654.12-201ENST00000639868 649 ntBASIC0.63□□□□□ -2.31
SHANK3Q9BYB0 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.62□□□□□ -2.31
SHANK3Q9BYB0 Y_RNA.151-201ENST00000363566 112 ntBASIC0.62□□□□□ -2.31
SHANK3Q9BYB0 RNU6-1085P-201ENST00000363576 107 ntBASIC0.62□□□□□ -2.31
SHANK3Q9BYB0 Y_RNA.170-201ENST00000363746 110 ntBASIC0.62□□□□□ -2.31
SHANK3Q9BYB0 SNORA4.2-201ENST00000365313 147 ntBASIC0.62□□□□□ -2.31
SHANK3Q9BYB0 Y_RNA.381-201ENST00000365666 102 ntBASIC0.62□□□□□ -2.31
SHANK3Q9BYB0 RNU6-331P-201ENST00000384724 107 ntBASIC0.62□□□□□ -2.31
SHANK3Q9BYB0 MIR32-201ENST00000384965 70 ntBASIC0.62□□□□□ -2.31
SHANK3Q9BYB0 AC245047.3-201ENST00000429428 127 ntBASIC0.62□□□□□ -2.31
SHANK3Q9BYB0 ERLEC1P1-201ENST00000433806 578 ntBASIC0.62□□□□□ -2.31
SHANK3Q9BYB0 AL606517.2-201ENST00000442855 241 ntBASIC0.62□□□□□ -2.31
SHANK3Q9BYB0 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.62□□□□□ -2.31
SHANK3Q9BYB0 SNORD65B-201ENST00000459126 73 ntBASIC0.62□□□□□ -2.31
SHANK3Q9BYB0 TRBVA-201ENST00000498804 316 ntBASIC0.62□□□□□ -2.31
SHANK3Q9BYB0 MTCO2P30-201ENST00000503662 364 ntBASIC0.62□□□□□ -2.31
SHANK3Q9BYB0 SNORA40.12-201ENST00000516329 111 ntBASIC0.62□□□□□ -2.31
SHANK3Q9BYB0 AC019288.1-201ENST00000557918 224 ntBASIC0.62□□□□□ -2.31
SHANK3Q9BYB0 POLR3GP2-201ENST00000588366 668 ntBASIC0.62□□□□□ -2.31
SHANK3Q9BYB0 AL390123.1-201ENST00000603216 237 ntBASIC0.62□□□□□ -2.31
SHANK3Q9BYB0 AL357312.1-201ENST00000603879 298 ntBASIC0.62□□□□□ -2.31
SHANK3Q9BYB0 AC022217.4-201ENST00000604389 163 ntBASIC0.62□□□□□ -2.31
SHANK3Q9BYB0 BX284668.6-201ENST00000606899 438 ntBASIC0.62□□□□□ -2.31
SHANK3Q9BYB0 MIR3974-201ENST00000637126 96 ntBASIC0.62□□□□□ -2.31
SHANK3Q9BYB0 Y_RNA.488-201ENST00000384403 102 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 RNU6-790P-201ENST00000384479 105 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 MIR521-1-201ENST00000384902 87 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 MIR153-2-201ENST00000385225 87 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 AL356776.1-201ENST00000406574 447 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 HSPE1P13-201ENST00000451143 297 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 RNU6-1038P-201ENST00000516516 104 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 RNU6-165P-201ENST00000517170 99 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 AC090049.2-201ENST00000550377 109 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 SNORA28-201ENST00000606769 126 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 AL121757.2-201ENST00000611223 313 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 AC009248.2-201ENST00000619826 254 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 RNA5SP327-201ENST00000362494 101 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 Y_RNA.48-201ENST00000362710 103 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 U3.8-201ENST00000363675 217 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 Y_RNA.179-201ENST00000363844 90 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 MIR200A-201ENST00000384875 90 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 CALM2P3-201ENST00000400429 449 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 AL034345.1-201ENST00000407768 123 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 RNU6-648P-201ENST00000410190 107 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 RNU2-66P-201ENST00000410650 161 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 AC245047.7-201ENST00000440265 293 ntBASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC0.61□□□□□ -2.31
SHANK3Q9BYB0 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 235.4 ms