Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RNU6-1338P-201ENST00000516328 91 ntBASIC2.19□□□□□ -2.06
CCDC28AQ8IWP9 RNU2-31P-201ENST00000516954 155 ntBASIC2.19□□□□□ -2.06
CCDC28AQ8IWP9 AC024995.1-201ENST00000523014 93 ntBASIC2.19□□□□□ -2.06
CCDC28AQ8IWP9 AC069114.2-201ENST00000604699 304 ntBASIC2.19□□□□□ -2.06
CCDC28AQ8IWP9 MIR92B-201ENST00000607575 96 ntBASIC2.19□□□□□ -2.06
CCDC28AQ8IWP9 MIR7112-201ENST00000616126 65 ntBASIC2.19□□□□□ -2.06
CCDC28AQ8IWP9 U1.36-201ENST00000620684 176 ntBASIC2.19□□□□□ -2.06
CCDC28AQ8IWP9 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.19□□□□□ -2.06
CCDC28AQ8IWP9 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
CCDC28AQ8IWP9 SNORA71.3-201ENST00000362582 128 ntBASIC2.18□□□□□ -2.06
CCDC28AQ8IWP9 Y_RNA.288-201ENST00000364854 92 ntBASIC2.18□□□□□ -2.06
CCDC28AQ8IWP9 SNORA9.2-201ENST00000365361 133 ntBASIC2.18□□□□□ -2.06
CCDC28AQ8IWP9 RNU6-514P-201ENST00000384208 107 ntBASIC2.18□□□□□ -2.06
CCDC28AQ8IWP9 SNORA48.1-201ENST00000390879 135 ntBASIC2.18□□□□□ -2.06
CCDC28AQ8IWP9 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
CCDC28AQ8IWP9 HSPE1P13-201ENST00000451143 297 ntBASIC2.18□□□□□ -2.06
CCDC28AQ8IWP9 AC097462.1-201ENST00000514125 324 ntBASIC2.18□□□□□ -2.06
CCDC28AQ8IWP9 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC2.18□□□□□ -2.06
CCDC28AQ8IWP9 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC2.18□□□□□ -2.06
CCDC28AQ8IWP9 MIR5004-201ENST00000579078 107 ntBASIC2.18□□□□□ -2.06
CCDC28AQ8IWP9 MIR3145-201ENST00000580727 82 ntBASIC2.18□□□□□ -2.06
CCDC28AQ8IWP9 MIR3200-201ENST00000580767 85 ntBASIC2.18□□□□□ -2.06
CCDC28AQ8IWP9 MIR4444-1-201ENST00000581696 74 ntBASIC2.18□□□□□ -2.06
CCDC28AQ8IWP9 MIR4503-201ENST00000582187 83 ntBASIC2.18□□□□□ -2.06
CCDC28AQ8IWP9 MIR5092-201ENST00000583139 88 ntBASIC2.18□□□□□ -2.06
CCDC28AQ8IWP9 MIR4444-2-201ENST00000584390 74 ntBASIC2.18□□□□□ -2.06
CCDC28AQ8IWP9 AP001282.2-201ENST00000616149 309 ntBASIC2.18□□□□□ -2.06
CCDC28AQ8IWP9 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.18□□□□□ -2.06
CCDC28AQ8IWP9 NAA50-211ENST00000630058 177 ntTSL 5 BASIC2.18□□□□□ -2.06
CCDC28AQ8IWP9 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.18□□□□□ -2.06
CCDC28AQ8IWP9 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.17□□□□□ -2.06
CCDC28AQ8IWP9 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
CCDC28AQ8IWP9 SNORA25.1-201ENST00000362326 128 ntBASIC2.17□□□□□ -2.06
CCDC28AQ8IWP9 Y_RNA.16-201ENST00000362421 102 ntBASIC2.17□□□□□ -2.06
CCDC28AQ8IWP9 RNU1-22P-201ENST00000363334 158 ntBASIC2.17□□□□□ -2.06
CCDC28AQ8IWP9 RNA5SP37-201ENST00000365420 130 ntBASIC2.17□□□□□ -2.06
CCDC28AQ8IWP9 Y_RNA.418-201ENST00000384029 102 ntBASIC2.17□□□□□ -2.06
CCDC28AQ8IWP9 Y_RNA.452-201ENST00000384202 108 ntBASIC2.17□□□□□ -2.06
CCDC28AQ8IWP9 SNORA54-201ENST00000384281 123 ntBASIC2.17□□□□□ -2.06
CCDC28AQ8IWP9 Y_RNA.518-201ENST00000384552 113 ntBASIC2.17□□□□□ -2.06
CCDC28AQ8IWP9 RNU6-851P-201ENST00000384565 107 ntBASIC2.17□□□□□ -2.06
CCDC28AQ8IWP9 RNA5SP323-201ENST00000391094 133 ntBASIC2.17□□□□□ -2.06
CCDC28AQ8IWP9 RNU6-1186P-201ENST00000410429 97 ntBASIC2.17□□□□□ -2.06
CCDC28AQ8IWP9 RNA5SP501-201ENST00000410990 112 ntBASIC2.17□□□□□ -2.06
CCDC28AQ8IWP9 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC2.17□□□□□ -2.06
CCDC28AQ8IWP9 AC010409.1-201ENST00000487382 476 ntBASIC2.17□□□□□ -2.06
CCDC28AQ8IWP9 SCGB1D5P-201ENST00000515134 247 ntBASIC2.17□□□□□ -2.06
CCDC28AQ8IWP9 RNU6-1278P-201ENST00000516130 107 ntBASIC2.17□□□□□ -2.06
CCDC28AQ8IWP9 RNU7-99P-201ENST00000516271 62 ntBASIC2.17□□□□□ -2.06
CCDC28AQ8IWP9 RNU1-142P-201ENST00000516682 145 ntBASIC2.17□□□□□ -2.06
CCDC28AQ8IWP9 RNU7-172P-201ENST00000517125 64 ntBASIC2.17□□□□□ -2.06
CCDC28AQ8IWP9 DEFB108E-201ENST00000524692 240 ntBASIC2.17□□□□□ -2.06
CCDC28AQ8IWP9 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.17□□□□□ -2.06
CCDC28AQ8IWP9 MIR3651-201ENST00000630427 90 ntBASIC2.17□□□□□ -2.06
CCDC28AQ8IWP9 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
CCDC28AQ8IWP9 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.16□□□□□ -2.06
CCDC28AQ8IWP9 MIR335-201ENST00000362173 94 ntBASIC2.16□□□□□ -2.06
CCDC28AQ8IWP9 MIR422A-201ENST00000362286 90 ntBASIC2.16□□□□□ -2.06
CCDC28AQ8IWP9 RNU4-80P-201ENST00000363200 141 ntBASIC2.16□□□□□ -2.06
CCDC28AQ8IWP9 RNU11-5P-201ENST00000391216 129 ntBASIC2.16□□□□□ -2.06
CCDC28AQ8IWP9 RNA5SP467-201ENST00000391274 118 ntBASIC2.16□□□□□ -2.06
CCDC28AQ8IWP9 EBAG9P1-201ENST00000418955 543 ntBASIC2.16□□□□□ -2.06
CCDC28AQ8IWP9 RPS15AP28-201ENST00000435088 386 ntBASIC2.16□□□□□ -2.06
CCDC28AQ8IWP9 RN7SL504P-201ENST00000494496 287 ntBASIC2.16□□□□□ -2.06
CCDC28AQ8IWP9 SERF1AP1-201ENST00000514575 187 ntBASIC2.16□□□□□ -2.06
CCDC28AQ8IWP9 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.16□□□□□ -2.06
CCDC28AQ8IWP9 MIR5094-201ENST00000578766 85 ntBASIC2.16□□□□□ -2.06
CCDC28AQ8IWP9 MIR3149-201ENST00000584629 83 ntBASIC2.16□□□□□ -2.06
CCDC28AQ8IWP9 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
CCDC28AQ8IWP9 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
CCDC28AQ8IWP9 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
CCDC28AQ8IWP9 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.15□□□□□ -2.06
CCDC28AQ8IWP9 AL391987.6-201ENST00000305671 199 ntBASIC2.15□□□□□ -2.07
CCDC28AQ8IWP9 SNORA33-201ENST00000363664 130 ntBASIC2.15□□□□□ -2.07
CCDC28AQ8IWP9 Y_RNA.237-201ENST00000364439 102 ntBASIC2.15□□□□□ -2.07
CCDC28AQ8IWP9 RNU6-702P-201ENST00000364982 107 ntBASIC2.15□□□□□ -2.07
CCDC28AQ8IWP9 SNORA8-201ENST00000384574 139 ntBASIC2.15□□□□□ -2.07
CCDC28AQ8IWP9 RNU6-855P-201ENST00000410395 104 ntBASIC2.15□□□□□ -2.07
CCDC28AQ8IWP9 MTCO1P5-201ENST00000433573 344 ntBASIC2.15□□□□□ -2.07
CCDC28AQ8IWP9 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC2.15□□□□□ -2.07
CCDC28AQ8IWP9 RNVU1-2-201ENST00000516326 135 ntBASIC2.15□□□□□ -2.07
CCDC28AQ8IWP9 RNU6-1337P-201ENST00000516525 95 ntBASIC2.15□□□□□ -2.07
CCDC28AQ8IWP9 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.15□□□□□ -2.07
CCDC28AQ8IWP9 ZNF861P-201ENST00000588126 639 ntBASIC2.15□□□□□ -2.07
CCDC28AQ8IWP9 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.15□□□□□ -2.07
CCDC28AQ8IWP9 TTK-211ENST00000627129 240 ntTSL 5 BASIC2.15□□□□□ -2.07
CCDC28AQ8IWP9 AP000553.5-201ENST00000641933 54 ntBASIC2.15□□□□□ -2.07
CCDC28AQ8IWP9 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
CCDC28AQ8IWP9 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.15□□□□□ -2.07
CCDC28AQ8IWP9 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
CCDC28AQ8IWP9 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC28AQ8IWP9 ZNF658B-202ENST00000615961 3375 ntBASIC2.14□□□□□ -2.07
CCDC28AQ8IWP9 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.14□□□□□ -2.07
CCDC28AQ8IWP9 Y_RNA.193-201ENST00000363979 102 ntBASIC2.14□□□□□ -2.07
CCDC28AQ8IWP9 RNU6-1019P-201ENST00000364424 107 ntBASIC2.14□□□□□ -2.07
CCDC28AQ8IWP9 RNU6-574P-201ENST00000384265 107 ntBASIC2.14□□□□□ -2.07
CCDC28AQ8IWP9 AL355497.1-201ENST00000406262 551 ntBASIC2.14□□□□□ -2.07
CCDC28AQ8IWP9 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC28AQ8IWP9 AC069257.2-201ENST00000441819 155 ntBASIC2.14□□□□□ -2.07
CCDC28AQ8IWP9 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 289.5 ms