Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.51□□□□□ -2.17
HOXC4P09017 RAC1P9-201ENST00000604990 392 ntBASIC1.51□□□□□ -2.17
HOXC4P09017 PCGEM1.1-201ENST00000613431 131 ntBASIC1.51□□□□□ -2.17
HOXC4P09017 AC011476.5-201ENST00000615594 130 ntBASIC1.51□□□□□ -2.17
HOXC4P09017 U1.36-201ENST00000620684 176 ntBASIC1.51□□□□□ -2.17
HOXC4P09017 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.51□□□□□ -2.17
HOXC4P09017 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
HOXC4P09017 ZNF204P-201ENST00000416749 2397 ntBASIC1.51□□□□□ -2.17
HOXC4P09017 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.5□□□□□ -2.17
HOXC4P09017 Y_RNA.105-201ENST00000363182 111 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 RNU6-873P-201ENST00000363833 107 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 RNU6-944P-201ENST00000364023 107 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 RNU1-42P-201ENST00000364033 160 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 RNU6-879P-201ENST00000364328 108 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 RNA5SP363-201ENST00000365072 115 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 AC117470.1-201ENST00000381974 330 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 RNU6-926P-201ENST00000384075 107 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 RNU6-281P-201ENST00000384212 103 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 RNU6-541P-201ENST00000384709 110 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.5□□□□□ -2.17
HOXC4P09017 RNU1-139P-201ENST00000391307 165 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 MIR1262-201ENST00000408276 93 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 RNU6-101P-201ENST00000410323 104 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 RNU6-1001P-201ENST00000411265 100 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 ELOCP20-201ENST00000422460 345 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 USP9YP16-201ENST00000430287 407 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 MTND3P2-201ENST00000438452 342 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.5□□□□□ -2.17
HOXC4P09017 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.5□□□□□ -2.17
HOXC4P09017 MTCO3P8-201ENST00000453691 755 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 USP9YP23-201ENST00000455085 407 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 RNU6-397P-201ENST00000516226 104 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 SNORA31.24-201ENST00000517232 57 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 AC131281.1-201ENST00000522984 164 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 AC023442.1-201ENST00000531247 422 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 AL442163.3-201ENST00000554110 156 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 AL117187.1-201ENST00000555482 181 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 AC008269.2-201ENST00000561915 1105 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 AC090517.1-201ENST00000569307 266 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 MIR3923-201ENST00000579521 83 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 MIR4713-201ENST00000582691 75 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 AL645939.4-201ENST00000604495 135 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 snoU13.31-201ENST00000607291 104 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.5□□□□□ -2.17
HOXC4P09017 AC005520.5-201ENST00000613926 164 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 AL357075.2-201ENST00000614906 189 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 U6.92-201ENST00000636464 89 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.5□□□□□ -2.17
HOXC4P09017 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.49□□□□□ -2.17
HOXC4P09017 AP000648.3-201ENST00000623539 4507 ntBASIC1.49□□□□□ -2.17
HOXC4P09017 RNU6-238P-201ENST00000363313 106 ntBASIC1.49□□□□□ -2.17
HOXC4P09017 Y_RNA.210-201ENST00000364161 110 ntBASIC1.49□□□□□ -2.17
HOXC4P09017 Y_RNA.214-201ENST00000364201 112 ntBASIC1.49□□□□□ -2.17
HOXC4P09017 Y_RNA.222-201ENST00000364264 102 ntBASIC1.49□□□□□ -2.17
HOXC4P09017 Y_RNA.458-201ENST00000384240 102 ntBASIC1.49□□□□□ -2.17
HOXC4P09017 MIR628-201ENST00000385229 95 ntBASIC1.49□□□□□ -2.17
HOXC4P09017 MIR1252-201ENST00000408861 65 ntBASIC1.49□□□□□ -2.17
HOXC4P09017 RPS26P42-201ENST00000413485 326 ntBASIC1.49□□□□□ -2.17
HOXC4P09017 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.49□□□□□ -2.17
HOXC4P09017 AC007215.1-201ENST00000464893 276 ntBASIC1.49□□□□□ -2.17
HOXC4P09017 MRPS35P2-201ENST00000508242 191 ntBASIC1.49□□□□□ -2.17
HOXC4P09017 RNU6-1114P-201ENST00000516022 107 ntBASIC1.49□□□□□ -2.17
HOXC4P09017 MIR449C-201ENST00000516047 92 ntBASIC1.49□□□□□ -2.17
HOXC4P09017 RNU6-911P-201ENST00000516523 104 ntBASIC1.49□□□□□ -2.17
HOXC4P09017 AC022616.4-201ENST00000522985 181 ntBASIC1.49□□□□□ -2.17
HOXC4P09017 AC093023.1-201ENST00000547375 507 ntBASIC1.49□□□□□ -2.17
HOXC4P09017 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.49□□□□□ -2.17
HOXC4P09017 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.49□□□□□ -2.17
HOXC4P09017 MZT1P2-201ENST00000604387 248 ntBASIC1.49□□□□□ -2.17
HOXC4P09017 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.49□□□□□ -2.17
HOXC4P09017 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.49□□□□□ -2.17
HOXC4P09017 Y_RNA.64-201ENST00000362845 102 ntBASIC1.48□□□□□ -2.17
HOXC4P09017 SNORD115-8-201ENST00000363856 82 ntBASIC1.48□□□□□ -2.17
HOXC4P09017 SNORD115-38-201ENST00000365037 82 ntBASIC1.48□□□□□ -2.17
HOXC4P09017 Y_RNA.471-201ENST00000384312 102 ntBASIC1.48□□□□□ -2.17
HOXC4P09017 RNY3P4-201ENST00000384428 101 ntBASIC1.48□□□□□ -2.17
HOXC4P09017 MIR329-1-201ENST00000385028 80 ntBASIC1.48□□□□□ -2.17
HOXC4P09017 RNU11-3P-201ENST00000391111 133 ntBASIC1.48□□□□□ -2.17
HOXC4P09017 RPL21P1-201ENST00000399532 476 ntBASIC1.48□□□□□ -2.17
HOXC4P09017 Y_RNA.595-201ENST00000410403 105 ntBASIC1.48□□□□□ -2.17
HOXC4P09017 Y_RNA.597-201ENST00000410463 100 ntBASIC1.48□□□□□ -2.17
HOXC4P09017 RPEP5-201ENST00000441137 268 ntBASIC1.48□□□□□ -2.17
HOXC4P09017 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.48□□□□□ -2.17
HOXC4P09017 RNU7-95P-201ENST00000459222 64 ntBASIC1.48□□□□□ -2.17
HOXC4P09017 SNORA25.14-201ENST00000516481 132 ntBASIC1.48□□□□□ -2.17
HOXC4P09017 RNU6-1012P-201ENST00000516606 109 ntBASIC1.48□□□□□ -2.17
HOXC4P09017 RNU6-635P-201ENST00000516651 102 ntBASIC1.48□□□□□ -2.17
HOXC4P09017 RNU6-897P-201ENST00000517135 105 ntBASIC1.48□□□□□ -2.17
HOXC4P09017 Y_RNA.721-201ENST00000517207 102 ntBASIC1.48□□□□□ -2.17
HOXC4P09017 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.48□□□□□ -2.17
HOXC4P09017 EIF4A1P12-201ENST00000551910 141 ntBASIC1.48□□□□□ -2.17
HOXC4P09017 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.48□□□□□ -2.17
HOXC4P09017 AC022254.1-201ENST00000567857 235 ntBASIC1.48□□□□□ -2.17
HOXC4P09017 AC137590.2-201ENST00000619709 240 ntBASIC1.48□□□□□ -2.17
HOXC4P09017 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.48□□□□□ -2.17
HOXC4P09017 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
HOXC4P09017 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.48□□□□□ -2.17
HOXC4P09017 BX322639.1-202ENST00000423987 2213 ntBASIC1.47□□□□□ -2.17
HOXC4P09017 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.47□□□□□ -2.17
HOXC4P09017 RNU1-58P-201ENST00000362413 163 ntBASIC1.47□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 326.5 ms