Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RNU6-884P-201ENST00000363889 107 ntBASIC3.55□□□□□ -1.84
CCDC39Q9UFE4 U8.6-201ENST00000364939 135 ntBASIC3.55□□□□□ -1.84
CCDC39Q9UFE4 RNA5SP504-201ENST00000410676 117 ntBASIC3.55□□□□□ -1.84
CCDC39Q9UFE4 Y_RNA.617-201ENST00000410920 90 ntBASIC3.55□□□□□ -1.84
CCDC39Q9UFE4 AC099548.1-201ENST00000421443 426 ntBASIC3.55□□□□□ -1.84
CCDC39Q9UFE4 TOMM22P2-201ENST00000430735 237 ntBASIC3.55□□□□□ -1.84
CCDC39Q9UFE4 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.55□□□□□ -1.84
CCDC39Q9UFE4 RN7SL499P-201ENST00000481141 276 ntBASIC3.55□□□□□ -1.84
CCDC39Q9UFE4 AC025754.2-201ENST00000606491 432 ntBASIC3.55□□□□□ -1.84
CCDC39Q9UFE4 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
CCDC39Q9UFE4 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC39Q9UFE4 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC39Q9UFE4 Y_RNA.388-201ENST00000383919 113 ntBASIC3.54□□□□□ -1.84
CCDC39Q9UFE4 SNORA79-201ENST00000408376 140 ntBASIC3.54□□□□□ -1.84
CCDC39Q9UFE4 SNORD88.1-201ENST00000408684 91 ntBASIC3.54□□□□□ -1.84
CCDC39Q9UFE4 MIR1278-201ENST00000408753 81 ntBASIC3.54□□□□□ -1.84
CCDC39Q9UFE4 RNY4P29-201ENST00000410801 97 ntBASIC3.54□□□□□ -1.84
CCDC39Q9UFE4 RNU4-47P-201ENST00000410876 114 ntBASIC3.54□□□□□ -1.84
CCDC39Q9UFE4 AC091153.1-201ENST00000466297 402 ntBASIC3.54□□□□□ -1.84
CCDC39Q9UFE4 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC39Q9UFE4 MIR3136-201ENST00000583498 78 ntBASIC3.54□□□□□ -1.84
CCDC39Q9UFE4 MIR6075-201ENST00000620782 95 ntBASIC3.54□□□□□ -1.84
CCDC39Q9UFE4 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC39Q9UFE4 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC39Q9UFE4 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 RNU6-978P-201ENST00000364371 103 ntBASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 RNA5SP72-201ENST00000364442 117 ntBASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 RNU6-487P-201ENST00000365430 104 ntBASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 RNU6-905P-201ENST00000384434 107 ntBASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 SNORA26.2-201ENST00000390922 122 ntBASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 AL139281.1-201ENST00000422120 335 ntBASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 HSPE1P21-201ENST00000438283 308 ntBASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 Z75741.1-201ENST00000446793 314 ntBASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 PRSS3P4-201ENST00000453323 162 ntBASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 Y_RNA.649-201ENST00000459077 103 ntBASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 RPS26P45-201ENST00000471748 340 ntBASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 AC117454.1-201ENST00000491120 168 ntBASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 RPL21P129-201ENST00000491732 478 ntBASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 RPS27AP10-201ENST00000496103 208 ntBASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 AIG1P1-201ENST00000503376 148 ntBASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 RNU6-781P-201ENST00000516377 101 ntBASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 RNU1-117P-201ENST00000517041 158 ntBASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 MIR3923-201ENST00000579521 83 ntBASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 MIR4429-201ENST00000580105 73 ntBASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 MIR4444-1-201ENST00000581696 74 ntBASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 MIR4444-2-201ENST00000584390 74 ntBASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 RPL30P11-203ENST00000598995 310 ntBASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 MIR548AY-201ENST00000617669 107 ntBASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 AC012314.7-201ENST00000619693 93 ntBASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 AC018692.3-201ENST00000623929 123 ntBASIC3.53□□□□□ -1.84
CCDC39Q9UFE4 AC002543.1-201ENST00000299783 1954 ntBASIC3.52□□□□□ -1.85
CCDC39Q9UFE4 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC39Q9UFE4 RNU6-294P-201ENST00000364999 102 ntBASIC3.52□□□□□ -1.85
CCDC39Q9UFE4 U8.9-201ENST00000365667 134 ntBASIC3.52□□□□□ -1.85
CCDC39Q9UFE4 RNU6-106P-201ENST00000384405 107 ntBASIC3.52□□□□□ -1.85
CCDC39Q9UFE4 MIR670-201ENST00000390142 98 ntBASIC3.52□□□□□ -1.85
CCDC39Q9UFE4 SNORA36B-201ENST00000410438 131 ntBASIC3.52□□□□□ -1.85
CCDC39Q9UFE4 NDUFS5P4-201ENST00000412983 318 ntBASIC3.52□□□□□ -1.85
CCDC39Q9UFE4 AC005300.1-201ENST00000428401 373 ntBASIC3.52□□□□□ -1.85
CCDC39Q9UFE4 AC005326.1-201ENST00000429197 123 ntBASIC3.52□□□□□ -1.85
CCDC39Q9UFE4 YME1L1P1-201ENST00000429435 297 ntBASIC3.52□□□□□ -1.85
CCDC39Q9UFE4 AC004386.2-201ENST00000441858 148 ntBASIC3.52□□□□□ -1.85
CCDC39Q9UFE4 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC39Q9UFE4 RN7SL863P-201ENST00000462370 296 ntBASIC3.52□□□□□ -1.85
CCDC39Q9UFE4 RN7SL601P-201ENST00000471221 293 ntBASIC3.52□□□□□ -1.85
CCDC39Q9UFE4 RNU5F-2P-201ENST00000516066 82 ntBASIC3.52□□□□□ -1.85
CCDC39Q9UFE4 RNU7-115P-201ENST00000516433 55 ntBASIC3.52□□□□□ -1.85
CCDC39Q9UFE4 SNORA31.26-201ENST00000517250 137 ntBASIC3.52□□□□□ -1.85
CCDC39Q9UFE4 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.52□□□□□ -1.85
CCDC39Q9UFE4 AC091178.2-201ENST00000584401 117 ntBASIC3.52□□□□□ -1.85
CCDC39Q9UFE4 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.52□□□□□ -1.85
CCDC39Q9UFE4 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
CCDC39Q9UFE4 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC39Q9UFE4 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC39Q9UFE4 SNORA71.3-201ENST00000362582 128 ntBASIC3.51□□□□□ -1.85
CCDC39Q9UFE4 SNORD114-19-201ENST00000363072 75 ntBASIC3.51□□□□□ -1.85
CCDC39Q9UFE4 RNU6-647P-201ENST00000364243 107 ntBASIC3.51□□□□□ -1.85
CCDC39Q9UFE4 CD24P4-201ENST00000382840 243 ntBASIC3.51□□□□□ -1.85
CCDC39Q9UFE4 SNORD15B-201ENST00000384714 146 ntBASIC3.51□□□□□ -1.85
CCDC39Q9UFE4 RNU6-19P-201ENST00000384718 107 ntBASIC3.51□□□□□ -1.85
CCDC39Q9UFE4 MIRLET7F2-201ENST00000385277 83 ntBASIC3.51□□□□□ -1.85
CCDC39Q9UFE4 SNORA48.7-201ENST00000391302 135 ntBASIC3.51□□□□□ -1.85
CCDC39Q9UFE4 U6atac.2-201ENST00000408644 118 ntBASIC3.51□□□□□ -1.85
CCDC39Q9UFE4 RNA5SP274-201ENST00000410484 108 ntBASIC3.51□□□□□ -1.85
CCDC39Q9UFE4 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC39Q9UFE4 SNORA70.12-201ENST00000516084 153 ntBASIC3.51□□□□□ -1.85
CCDC39Q9UFE4 RN7SKP282-201ENST00000516824 299 ntBASIC3.51□□□□□ -1.85
CCDC39Q9UFE4 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.51□□□□□ -1.85
CCDC39Q9UFE4 AC025281.1-201ENST00000567026 265 ntBASIC3.51□□□□□ -1.85
CCDC39Q9UFE4 MIR5680-201ENST00000577577 84 ntBASIC3.51□□□□□ -1.85
CCDC39Q9UFE4 AC005562.2-201ENST00000618264 111 ntBASIC3.51□□□□□ -1.85
CCDC39Q9UFE4 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.51□□□□□ -1.85
CCDC39Q9UFE4 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC39Q9UFE4 MAPK10-322ENST00000641485 4530 ntBASIC3.51□□□□□ -1.85
CCDC39Q9UFE4 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC39Q9UFE4 RNU6-640P-201ENST00000363693 105 ntBASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 170 ms