Protein–RNA interactions for Protein: Q07011

TNFRSF9, Tumor necrosis factor receptor superfamily member 9, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF9Q07011 AC243428.1-201ENST00000421099 264 ntBASIC0.87□□□□□ -2.27
TNFRSF9Q07011 PGBD4P5-201ENST00000445958 426 ntBASIC0.87□□□□□ -2.27
TNFRSF9Q07011 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC0.87□□□□□ -2.27
TNFRSF9Q07011 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.87□□□□□ -2.27
TNFRSF9Q07011 MTND5P5-201ENST00000503764 376 ntBASIC0.87□□□□□ -2.27
TNFRSF9Q07011 RNU6-344P-201ENST00000516635 111 ntBASIC0.87□□□□□ -2.27
TNFRSF9Q07011 RNU1-54P-201ENST00000517181 120 ntBASIC0.87□□□□□ -2.27
TNFRSF9Q07011 RNA5SP437-201ENST00000517249 129 ntBASIC0.87□□□□□ -2.27
TNFRSF9Q07011 AK6P2-201ENST00000549020 471 ntBASIC0.87□□□□□ -2.27
TNFRSF9Q07011 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.87□□□□□ -2.27
TNFRSF9Q07011 AC136932.1-201ENST00000574771 208 ntBASIC0.87□□□□□ -2.27
TNFRSF9Q07011 MIR4790-201ENST00000577799 79 ntBASIC0.87□□□□□ -2.27
TNFRSF9Q07011 MIR4742-201ENST00000581069 85 ntBASIC0.87□□□□□ -2.27
TNFRSF9Q07011 AC136443.5-201ENST00000603741 370 ntBASIC0.87□□□□□ -2.27
TNFRSF9Q07011 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC0.87□□□□□ -2.27
TNFRSF9Q07011 AC098679.4-201ENST00000624241 654 ntBASIC0.87□□□□□ -2.27
TNFRSF9Q07011 PLD1-217ENST00000627725 174 ntTSL 5 BASIC0.87□□□□□ -2.27
TNFRSF9Q07011 MIR338-201ENST00000636369 67 ntBASIC0.87□□□□□ -2.27
TNFRSF9Q07011 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC0.87□□□□□ -2.27
TNFRSF9Q07011 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC0.87□□□□□ -2.27
TNFRSF9Q07011 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.86□□□□□ -2.27
TNFRSF9Q07011 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC0.86□□□□□ -2.27
TNFRSF9Q07011 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC0.86□□□□□ -2.27
TNFRSF9Q07011 MTND4P12-201ENST00000498999 1377 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 AC010615.1-201ENST00000594254 1764 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 Y_RNA.122-201ENST00000363331 96 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 RNU6-727P-201ENST00000363592 107 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 SNORA33-201ENST00000363664 130 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 RNU6-873P-201ENST00000363833 107 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 RNU6-595P-201ENST00000363944 107 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 RNU6-596P-201ENST00000365395 98 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 RNU6-1235P-201ENST00000384559 107 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 RNU6-541P-201ENST00000384709 110 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 RNU6-417P-201ENST00000384712 107 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 MIR548B-201ENST00000385247 97 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 RNU6-159P-201ENST00000391080 106 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 RNU6-510P-201ENST00000391239 108 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC0.86□□□□□ -2.27
TNFRSF9Q07011 AL356776.1-201ENST00000406574 447 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 AC016909.1-201ENST00000415916 166 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 MTCO3P29-201ENST00000432119 779 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 HSPE1P9-201ENST00000440046 311 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 SNORD5.1-201ENST00000458800 75 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 RNU6-498P-201ENST00000459468 107 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC0.86□□□□□ -2.27
TNFRSF9Q07011 RNU6-358P-201ENST00000516564 75 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 RNU6-1198P-201ENST00000516904 67 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 CBX3P8-201ENST00000532412 525 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 MDM2-232ENST00000544561 213 ntTSL 5 BASIC0.86□□□□□ -2.27
TNFRSF9Q07011 MIR4295-201ENST00000585286 85 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 AC080078.2-201ENST00000603766 501 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 AC006001.4-201ENST00000622243 395 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 AL078596.1-201ENST00000624856 447 ntBASIC0.86□□□□□ -2.27
TNFRSF9Q07011 RNU6-1019P-201ENST00000364424 107 ntBASIC0.85□□□□□ -2.27
TNFRSF9Q07011 Y_RNA.287-201ENST00000364853 94 ntBASIC0.85□□□□□ -2.27
TNFRSF9Q07011 MIR520A-201ENST00000384862 85 ntBASIC0.85□□□□□ -2.27
TNFRSF9Q07011 RNA5SP467-201ENST00000391274 118 ntBASIC0.85□□□□□ -2.27
TNFRSF9Q07011 MIR548K-201ENST00000408406 116 ntBASIC0.85□□□□□ -2.27
TNFRSF9Q07011 RNU2-7P-201ENST00000410794 178 ntBASIC0.85□□□□□ -2.27
TNFRSF9Q07011 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.85□□□□□ -2.27
TNFRSF9Q07011 MTND3P8-201ENST00000412909 339 ntBASIC0.85□□□□□ -2.27
TNFRSF9Q07011 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC0.85□□□□□ -2.27
TNFRSF9Q07011 HMGN2P34-201ENST00000437647 269 ntBASIC0.85□□□□□ -2.27
TNFRSF9Q07011 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC0.85□□□□□ -2.27
TNFRSF9Q07011 AP000870.1-201ENST00000472927 406 ntBASIC0.85□□□□□ -2.27
TNFRSF9Q07011 AC018710.1-201ENST00000506509 158 ntBASIC0.85□□□□□ -2.27
TNFRSF9Q07011 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.85□□□□□ -2.27
TNFRSF9Q07011 AC026782.1-201ENST00000512952 449 ntBASIC0.85□□□□□ -2.27
TNFRSF9Q07011 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC0.85□□□□□ -2.27
TNFRSF9Q07011 RNU7-175P-201ENST00000515915 61 ntBASIC0.85□□□□□ -2.27
TNFRSF9Q07011 RNU2-34P-201ENST00000516534 121 ntBASIC0.85□□□□□ -2.27
TNFRSF9Q07011 MTND4LP26-201ENST00000518144 282 ntBASIC0.85□□□□□ -2.27
TNFRSF9Q07011 AL590705.4-201ENST00000532209 134 ntBASIC0.85□□□□□ -2.27
TNFRSF9Q07011 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC0.85□□□□□ -2.27
TNFRSF9Q07011 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC0.85□□□□□ -2.27
TNFRSF9Q07011 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC0.85□□□□□ -2.27
TNFRSF9Q07011 MIR3937-201ENST00000580135 106 ntBASIC0.85□□□□□ -2.27
TNFRSF9Q07011 AC069114.2-201ENST00000604699 304 ntBASIC0.85□□□□□ -2.27
TNFRSF9Q07011 SNORD11B-201ENST00000607707 90 ntBASIC0.85□□□□□ -2.27
TNFRSF9Q07011 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC0.85□□□□□ -2.27
TNFRSF9Q07011 AC008873.1-201ENST00000625051 138 ntBASIC0.85□□□□□ -2.27
TNFRSF9Q07011 AC095038.3-201ENST00000634439 195 ntBASIC0.85□□□□□ -2.27
TNFRSF9Q07011 ZNF299P-201ENST00000406845 1804 ntBASIC0.85□□□□□ -2.27
TNFRSF9Q07011 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.84□□□□□ -2.27
TNFRSF9Q07011 snoU2-30.2-201ENST00000362805 70 ntBASIC0.84□□□□□ -2.27
TNFRSF9Q07011 SNORA63D-201ENST00000364359 132 ntBASIC0.84□□□□□ -2.27
TNFRSF9Q07011 Y_RNA.339-201ENST00000365325 102 ntBASIC0.84□□□□□ -2.27
TNFRSF9Q07011 Y_RNA.415-201ENST00000384012 112 ntBASIC0.84□□□□□ -2.27
TNFRSF9Q07011 RNU6-245P-201ENST00000384020 107 ntBASIC0.84□□□□□ -2.27
TNFRSF9Q07011 MIR10B-201ENST00000385011 110 ntBASIC0.84□□□□□ -2.27
TNFRSF9Q07011 RNU6-360P-201ENST00000390944 104 ntBASIC0.84□□□□□ -2.27
TNFRSF9Q07011 RPL21P1-201ENST00000399532 476 ntBASIC0.84□□□□□ -2.27
TNFRSF9Q07011 MIR548F5-201ENST00000408421 86 ntBASIC0.84□□□□□ -2.27
TNFRSF9Q07011 Y_RNA.599-201ENST00000410489 109 ntBASIC0.84□□□□□ -2.27
TNFRSF9Q07011 Y_RNA.619-201ENST00000410951 90 ntBASIC0.84□□□□□ -2.27
TNFRSF9Q07011 MTND3P23-201ENST00000431980 347 ntBASIC0.84□□□□□ -2.27
TNFRSF9Q07011 RPS3AP52-201ENST00000435639 297 ntBASIC0.84□□□□□ -2.27
TNFRSF9Q07011 JTBP1-201ENST00000441314 247 ntBASIC0.84□□□□□ -2.27
TNFRSF9Q07011 AC073910.1-201ENST00000445047 438 ntBASIC0.84□□□□□ -2.27
TNFRSF9Q07011 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC0.84□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 262.9 ms