Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 MZT1P2-201ENST00000604387 248 ntBASIC1.39□□□□□ -2.19
CCDC43Q96MW1 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.39□□□□□ -2.19
CCDC43Q96MW1 Y_RNA.100-201ENST00000363141 102 ntBASIC1.38□□□□□ -2.19
CCDC43Q96MW1 U3.8-201ENST00000363675 217 ntBASIC1.38□□□□□ -2.19
CCDC43Q96MW1 Y_RNA.415-201ENST00000384012 112 ntBASIC1.38□□□□□ -2.19
CCDC43Q96MW1 RNU6-1031P-201ENST00000384773 107 ntBASIC1.38□□□□□ -2.19
CCDC43Q96MW1 DLGAP5P1-201ENST00000430307 464 ntBASIC1.38□□□□□ -2.19
CCDC43Q96MW1 AC015922.2-201ENST00000435593 184 ntBASIC1.38□□□□□ -2.19
CCDC43Q96MW1 MTCO2P7-201ENST00000446518 666 ntBASIC1.38□□□□□ -2.19
CCDC43Q96MW1 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.38□□□□□ -2.19
CCDC43Q96MW1 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.38□□□□□ -2.19
CCDC43Q96MW1 TRMT112P2-201ENST00000512910 132 ntBASIC1.38□□□□□ -2.19
CCDC43Q96MW1 NDUFAF4P1-201ENST00000559425 519 ntBASIC1.38□□□□□ -2.19
CCDC43Q96MW1 AC008269.2-201ENST00000561915 1105 ntBASIC1.38□□□□□ -2.19
CCDC43Q96MW1 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.37□□□□□ -2.19
CCDC43Q96MW1 RNU6-137P-201ENST00000363680 108 ntBASIC1.37□□□□□ -2.19
CCDC43Q96MW1 RNU6-159P-201ENST00000391080 106 ntBASIC1.37□□□□□ -2.19
CCDC43Q96MW1 AL356776.1-201ENST00000406574 447 ntBASIC1.37□□□□□ -2.19
CCDC43Q96MW1 MTATP6P13-201ENST00000438531 667 ntBASIC1.37□□□□□ -2.19
CCDC43Q96MW1 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.37□□□□□ -2.19
CCDC43Q96MW1 Z83846.1-201ENST00000446798 265 ntBASIC1.37□□□□□ -2.19
CCDC43Q96MW1 NDUFB4P10-201ENST00000452541 359 ntBASIC1.37□□□□□ -2.19
CCDC43Q96MW1 AC091179.3-201ENST00000474761 144 ntBASIC1.37□□□□□ -2.19
CCDC43Q96MW1 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.37□□□□□ -2.19
CCDC43Q96MW1 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.37□□□□□ -2.19
CCDC43Q96MW1 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.37□□□□□ -2.19
CCDC43Q96MW1 AC073413.2-201ENST00000604332 360 ntBASIC1.37□□□□□ -2.19
CCDC43Q96MW1 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.37□□□□□ -2.19
CCDC43Q96MW1 MIR8065-201ENST00000620577 100 ntBASIC1.37□□□□□ -2.19
CCDC43Q96MW1 MIR8054-201ENST00000620877 86 ntBASIC1.37□□□□□ -2.19
CCDC43Q96MW1 MIR337-201ENST00000362281 93 ntBASIC1.36□□□□□ -2.19
CCDC43Q96MW1 RNU6-280P-201ENST00000364145 104 ntBASIC1.36□□□□□ -2.19
CCDC43Q96MW1 SNORA25.8-201ENST00000364831 128 ntBASIC1.36□□□□□ -2.19
CCDC43Q96MW1 RNU6-17P-201ENST00000384245 107 ntBASIC1.36□□□□□ -2.19
CCDC43Q96MW1 RNU6-18P-201ENST00000384527 107 ntBASIC1.36□□□□□ -2.19
CCDC43Q96MW1 RNU6-306P-201ENST00000384617 107 ntBASIC1.36□□□□□ -2.19
CCDC43Q96MW1 RN7SKP200-201ENST00000410564 320 ntBASIC1.36□□□□□ -2.19
CCDC43Q96MW1 RPS29P29-201ENST00000456396 171 ntBASIC1.36□□□□□ -2.19
CCDC43Q96MW1 RPL31P58-201ENST00000469001 379 ntBASIC1.36□□□□□ -2.19
CCDC43Q96MW1 AL133373.1-201ENST00000497098 94 ntBASIC1.36□□□□□ -2.19
CCDC43Q96MW1 RN7SKP88-201ENST00000516847 250 ntBASIC1.36□□□□□ -2.19
CCDC43Q96MW1 AC090821.2-201ENST00000523552 176 ntBASIC1.36□□□□□ -2.19
CCDC43Q96MW1 AL137100.2-201ENST00000555786 315 ntBASIC1.36□□□□□ -2.19
CCDC43Q96MW1 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.36□□□□□ -2.19
CCDC43Q96MW1 MIR5696-201ENST00000578474 85 ntBASIC1.36□□□□□ -2.19
CCDC43Q96MW1 MIR3664-201ENST00000579074 99 ntBASIC1.36□□□□□ -2.19
CCDC43Q96MW1 MIR3942-201ENST00000585264 109 ntBASIC1.36□□□□□ -2.19
CCDC43Q96MW1 7SK.7-201ENST00000603504 247 ntBASIC1.36□□□□□ -2.19
CCDC43Q96MW1 AL050343.2-201ENST00000607338 280 ntBASIC1.36□□□□□ -2.19
CCDC43Q96MW1 7SK.8-201ENST00000612110 250 ntBASIC1.36□□□□□ -2.19
CCDC43Q96MW1 7SK.11-201ENST00000615477 250 ntBASIC1.36□□□□□ -2.19
CCDC43Q96MW1 7SK.13-201ENST00000622040 250 ntBASIC1.36□□□□□ -2.19
CCDC43Q96MW1 AC091895.1-201ENST00000624494 256 ntBASIC1.36□□□□□ -2.19
CCDC43Q96MW1 AC091812.1-201ENST00000432235 1948 ntBASIC1.35□□□□□ -2.19
CCDC43Q96MW1 RNU6-793P-201ENST00000384233 104 ntBASIC1.35□□□□□ -2.19
CCDC43Q96MW1 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
CCDC43Q96MW1 RNU6-440P-201ENST00000390882 105 ntBASIC1.35□□□□□ -2.19
CCDC43Q96MW1 AC005840.1-201ENST00000498412 377 ntBASIC1.35□□□□□ -2.19
CCDC43Q96MW1 RNU6-273P-201ENST00000516937 96 ntBASIC1.35□□□□□ -2.19
CCDC43Q96MW1 RNU7-128P-201ENST00000517247 62 ntBASIC1.35□□□□□ -2.19
CCDC43Q96MW1 AC109635.3-201ENST00000529536 185 ntBASIC1.35□□□□□ -2.19
CCDC43Q96MW1 MIR4273-201ENST00000582824 84 ntBASIC1.35□□□□□ -2.19
CCDC43Q96MW1 AL355802.3-201ENST00000607571 545 ntBASIC1.35□□□□□ -2.19
CCDC43Q96MW1 U6.73-201ENST00000619194 103 ntBASIC1.35□□□□□ -2.19
CCDC43Q96MW1 AC090617.10-201ENST00000624308 134 ntBASIC1.35□□□□□ -2.19
CCDC43Q96MW1 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
CCDC43Q96MW1 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.34□□□□□ -2.19
CCDC43Q96MW1 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.34□□□□□ -2.19
CCDC43Q96MW1 RNU6-1266P-201ENST00000362794 105 ntBASIC1.34□□□□□ -2.19
CCDC43Q96MW1 Y_RNA.179-201ENST00000363844 90 ntBASIC1.34□□□□□ -2.19
CCDC43Q96MW1 RNU6-321P-201ENST00000410912 106 ntBASIC1.34□□□□□ -2.19
CCDC43Q96MW1 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.34□□□□□ -2.19
CCDC43Q96MW1 AC245047.3-201ENST00000429428 127 ntBASIC1.34□□□□□ -2.19
CCDC43Q96MW1 AC093534.1-201ENST00000504977 132 ntBASIC1.34□□□□□ -2.19
CCDC43Q96MW1 RNU7-175P-201ENST00000515915 61 ntBASIC1.34□□□□□ -2.19
CCDC43Q96MW1 AL390123.1-201ENST00000603216 237 ntBASIC1.34□□□□□ -2.19
CCDC43Q96MW1 RNY1P10-201ENST00000363268 113 ntBASIC1.33□□□□□ -2.2
CCDC43Q96MW1 RNU4-24P-201ENST00000364565 139 ntBASIC1.33□□□□□ -2.2
CCDC43Q96MW1 Y_RNA.402-201ENST00000383972 102 ntBASIC1.33□□□□□ -2.2
CCDC43Q96MW1 Y_RNA.533-201ENST00000384596 114 ntBASIC1.33□□□□□ -2.2
CCDC43Q96MW1 MIR150-201ENST00000385048 84 ntBASIC1.33□□□□□ -2.2
CCDC43Q96MW1 MRPL42P3-201ENST00000401492 326 ntBASIC1.33□□□□□ -2.2
CCDC43Q96MW1 AC243428.1-201ENST00000421099 264 ntBASIC1.33□□□□□ -2.2
CCDC43Q96MW1 MTND3P21-201ENST00000433774 331 ntBASIC1.33□□□□□ -2.2
CCDC43Q96MW1 AP000870.1-201ENST00000472927 406 ntBASIC1.33□□□□□ -2.2
CCDC43Q96MW1 RNU7-99P-201ENST00000516271 62 ntBASIC1.33□□□□□ -2.2
CCDC43Q96MW1 AC022432.1-201ENST00000595739 310 ntBASIC1.33□□□□□ -2.2
CCDC43Q96MW1 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
CCDC43Q96MW1 Y_RNA.405-201ENST00000383979 100 ntBASIC1.32□□□□□ -2.2
CCDC43Q96MW1 Y_RNA.451-201ENST00000384200 100 ntBASIC1.32□□□□□ -2.2
CCDC43Q96MW1 Y_RNA.524-201ENST00000384564 100 ntBASIC1.32□□□□□ -2.2
CCDC43Q96MW1 RNU6-939P-201ENST00000384634 107 ntBASIC1.32□□□□□ -2.2
CCDC43Q96MW1 Y_RNA.561-201ENST00000384694 100 ntBASIC1.32□□□□□ -2.2
CCDC43Q96MW1 MIR618-201ENST00000385287 98 ntBASIC1.32□□□□□ -2.2
CCDC43Q96MW1 RNU6-373P-201ENST00000411247 98 ntBASIC1.32□□□□□ -2.2
CCDC43Q96MW1 TOMM22P2-201ENST00000430735 237 ntBASIC1.32□□□□□ -2.2
CCDC43Q96MW1 AC027419.1-201ENST00000522976 328 ntBASIC1.32□□□□□ -2.2
CCDC43Q96MW1 AC134698.4-201ENST00000523451 826 ntBASIC1.32□□□□□ -2.2
CCDC43Q96MW1 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC1.32□□□□□ -2.2
CCDC43Q96MW1 AL021879.1-201ENST00000611756 288 ntBASIC1.32□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 191.9 ms