Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SNORD115-18-201ENST00000363293 82 ntBASIC4.27□□□□□ -1.73
COL9A1P20849 SNORD115-13-201ENST00000363358 82 ntBASIC4.27□□□□□ -1.73
COL9A1P20849 SNORD115-16-201ENST00000363887 82 ntBASIC4.27□□□□□ -1.73
COL9A1P20849 SNORA38.1-201ENST00000364172 131 ntBASIC4.27□□□□□ -1.73
COL9A1P20849 SNORD115-17-201ENST00000364612 82 ntBASIC4.27□□□□□ -1.73
COL9A1P20849 SNORD115-1-201ENST00000364961 82 ntBASIC4.27□□□□□ -1.73
COL9A1P20849 RNU6-409P-201ENST00000384114 104 ntBASIC4.27□□□□□ -1.73
COL9A1P20849 Y_RNA.440-201ENST00000384120 114 ntBASIC4.27□□□□□ -1.73
COL9A1P20849 HMGN2P18-201ENST00000450680 270 ntBASIC4.27□□□□□ -1.73
COL9A1P20849 HMGN2P16-201ENST00000456802 261 ntBASIC4.27□□□□□ -1.73
COL9A1P20849 RNU2-58P-201ENST00000516403 183 ntBASIC4.27□□□□□ -1.73
COL9A1P20849 RNU6-341P-201ENST00000516973 96 ntBASIC4.27□□□□□ -1.73
COL9A1P20849 AC091544.4-201ENST00000555268 342 ntBASIC4.27□□□□□ -1.73
COL9A1P20849 AC087741.2-201ENST00000619415 172 ntBASIC4.27□□□□□ -1.73
COL9A1P20849 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.27□□□□□ -1.73
COL9A1P20849 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
COL9A1P20849 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL9A1P20849 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL9A1P20849 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.26□□□□□ -1.73
COL9A1P20849 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL9A1P20849 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL9A1P20849 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.26□□□□□ -1.73
COL9A1P20849 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL9A1P20849 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL9A1P20849 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL9A1P20849 RNU6-776P-201ENST00000364403 104 ntBASIC4.26□□□□□ -1.73
COL9A1P20849 SNORD45B-201ENST00000364617 72 ntBASIC4.26□□□□□ -1.73
COL9A1P20849 RNU6-60P-201ENST00000364792 103 ntBASIC4.26□□□□□ -1.73
COL9A1P20849 RNU6-1022P-201ENST00000365049 104 ntBASIC4.26□□□□□ -1.73
COL9A1P20849 RNU6-442P-201ENST00000383968 104 ntBASIC4.26□□□□□ -1.73
COL9A1P20849 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
COL9A1P20849 MIR1183-201ENST00000408856 89 ntBASIC4.26□□□□□ -1.73
COL9A1P20849 MIR1911-201ENST00000410783 80 ntBASIC4.26□□□□□ -1.73
COL9A1P20849 RN7SKP167-201ENST00000411047 285 ntBASIC4.26□□□□□ -1.73
COL9A1P20849 RPS26P2-201ENST00000440331 348 ntBASIC4.26□□□□□ -1.73
COL9A1P20849 RN7SL323P-201ENST00000494712 295 ntBASIC4.26□□□□□ -1.73
COL9A1P20849 RNU6-1291P-201ENST00000516591 104 ntBASIC4.26□□□□□ -1.73
COL9A1P20849 RNU6-856P-201ENST00000516959 98 ntBASIC4.26□□□□□ -1.73
COL9A1P20849 RNU6-586P-201ENST00000517265 104 ntBASIC4.26□□□□□ -1.73
COL9A1P20849 IGHVII-40-1-201ENST00000517316 58 ntBASIC4.26□□□□□ -1.73
COL9A1P20849 MIR3618-201ENST00000580330 88 ntBASIC4.26□□□□□ -1.73
COL9A1P20849 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC4.26□□□□□ -1.73
COL9A1P20849 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL9A1P20849 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL9A1P20849 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL9A1P20849 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.26□□□□□ -1.73
COL9A1P20849 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL9A1P20849 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC4.25□□□□□ -1.73
COL9A1P20849 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL9A1P20849 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL9A1P20849 Y_RNA.351-201ENST00000365436 96 ntBASIC4.25□□□□□ -1.73
COL9A1P20849 MIR522-201ENST00000385071 87 ntBASIC4.25□□□□□ -1.73
COL9A1P20849 RNA5SP239-201ENST00000410218 129 ntBASIC4.25□□□□□ -1.73
COL9A1P20849 RNU6-1186P-201ENST00000410429 97 ntBASIC4.25□□□□□ -1.73
COL9A1P20849 RNA5SP247-201ENST00000411181 105 ntBASIC4.25□□□□□ -1.73
COL9A1P20849 AL035423.1-201ENST00000420331 213 ntBASIC4.25□□□□□ -1.73
COL9A1P20849 AC108751.2-201ENST00000469993 231 ntBASIC4.25□□□□□ -1.73
COL9A1P20849 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC4.25□□□□□ -1.73
COL9A1P20849 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.25□□□□□ -1.73
COL9A1P20849 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
COL9A1P20849 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
COL9A1P20849 MAPK10-372ENST00000641954 3413 ntBASIC4.25□□□□□ -1.73
COL9A1P20849 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
COL9A1P20849 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
COL9A1P20849 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC4.25□□□□□ -1.73
COL9A1P20849 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL9A1P20849 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.24□□□□□ -1.73
COL9A1P20849 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL9A1P20849 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC4.24□□□□□ -1.73
COL9A1P20849 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL9A1P20849 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL9A1P20849 SNORD115-35-201ENST00000365122 82 ntBASIC4.24□□□□□ -1.73
COL9A1P20849 SNORD66.1-201ENST00000391230 76 ntBASIC4.24□□□□□ -1.73
COL9A1P20849 SNORA3C-201ENST00000408792 125 ntBASIC4.24□□□□□ -1.73
COL9A1P20849 BTF3P4-201ENST00000418852 495 ntBASIC4.24□□□□□ -1.73
COL9A1P20849 AL445646.1-201ENST00000431784 216 ntBASIC4.24□□□□□ -1.73
COL9A1P20849 RNU7-25P-201ENST00000516544 62 ntBASIC4.24□□□□□ -1.73
COL9A1P20849 Y_RNA.705-201ENST00000516862 110 ntBASIC4.24□□□□□ -1.73
COL9A1P20849 SNORA31.21-201ENST00000517180 77 ntBASIC4.24□□□□□ -1.73
COL9A1P20849 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC4.24□□□□□ -1.73
COL9A1P20849 AC006064.5-201ENST00000541782 248 ntBASIC4.24□□□□□ -1.73
COL9A1P20849 AC233702.9-201ENST00000581528 203 ntBASIC4.24□□□□□ -1.73
COL9A1P20849 MIR4672-201ENST00000583126 81 ntBASIC4.24□□□□□ -1.73
COL9A1P20849 Clostridiales-1.3-201ENST00000637703 147 ntBASIC4.24□□□□□ -1.73
COL9A1P20849 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.24□□□□□ -1.73
COL9A1P20849 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.24□□□□□ -1.73
COL9A1P20849 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
COL9A1P20849 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC4.24□□□□□ -1.73
COL9A1P20849 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL9A1P20849 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC4.23□□□□□ -1.73
COL9A1P20849 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.23□□□□□ -1.73
COL9A1P20849 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
COL9A1P20849 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.23□□□□□ -1.73
COL9A1P20849 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
COL9A1P20849 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL9A1P20849 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL9A1P20849 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL9A1P20849 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL9A1P20849 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC4.23□□□□□ -1.73
COL9A1P20849 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 179.6 ms