Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC099799.1-201ENST00000439809 192 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 AC016700.2-201ENST00000446011 156 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 snoU13.30-201ENST00000458951 104 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 RN7SKP210-201ENST00000459176 261 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 RNU7-87P-201ENST00000459343 62 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 MTATP8P1-201ENST00000467115 207 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 AC015911.1-201ENST00000495111 156 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 AC016632.1-201ENST00000503994 196 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.57□□□□□ -2.16
HOXC4P09017 SNORD53B-201ENST00000577887 78 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 AL132822.1-201ENST00000617063 513 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 AC090517.3-201ENST00000625170 141 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 SCARNA4-201ENST00000629045 128 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 SNORD98-201ENST00000636377 67 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 AP000560.1-201ENST00000624150 1937 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 AC005592.1-201ENST00000566527 1640 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
HOXC4P09017 RNU6-661P-201ENST00000362409 107 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 RNU6-1210P-201ENST00000363775 107 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 RNU4-9P-201ENST00000364951 139 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 RNU6-17P-201ENST00000384245 107 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 RNU6-18P-201ENST00000384527 107 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 Y_RNA.557-201ENST00000384680 107 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 RNU6-823P-201ENST00000391042 103 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 SNORA26.3-201ENST00000391119 136 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 RNU6-985P-201ENST00000410182 104 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 Y_RNA.592-201ENST00000410274 109 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 Y_RNA.605-201ENST00000410577 105 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.56□□□□□ -2.16
HOXC4P09017 AC078809.1-201ENST00000427601 140 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.56□□□□□ -2.16
HOXC4P09017 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC1.56□□□□□ -2.16
HOXC4P09017 snoU13.14-201ENST00000459372 104 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 U8.20-201ENST00000459445 131 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 AP000870.1-201ENST00000472927 406 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 AL121594.1-201ENST00000475906 575 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
HOXC4P09017 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.56□□□□□ -2.16
HOXC4P09017 RNU7-175P-201ENST00000515915 61 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 RNU6-1045P-201ENST00000516321 107 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.56□□□□□ -2.16
HOXC4P09017 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.56□□□□□ -2.16
HOXC4P09017 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.56□□□□□ -2.16
HOXC4P09017 UBL5P4-201ENST00000562584 236 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 AC006600.1-201ENST00000572529 153 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.56□□□□□ -2.16
HOXC4P09017 Z98751.3-201ENST00000604447 521 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 AL356157.2-201ENST00000605122 111 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 AC007792.1-201ENST00000623023 402 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 MTND5P16-201ENST00000460269 1703 ntBASIC1.56□□□□□ -2.16
HOXC4P09017 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.56□□□□□ -2.16
HOXC4P09017 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
HOXC4P09017 snoU2_19.1-201ENST00000362361 80 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 RNU4-15P-201ENST00000362613 141 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 Y_RNA.140-201ENST00000363474 103 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 Y_RNA.153-201ENST00000363615 91 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 RNU6-60P-201ENST00000364792 103 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 RNU6-546P-201ENST00000383991 107 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 Y_RNA.422-201ENST00000384054 114 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 Y_RNA.459-201ENST00000384251 102 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 RNU6-378P-201ENST00000384324 107 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 RNU6-1274P-201ENST00000384557 107 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 SNORA8-201ENST00000384574 139 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 MIR625-201ENST00000385047 85 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
HOXC4P09017 SNORA69.1-201ENST00000390904 137 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 CBX3P9-201ENST00000402326 552 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 RNU2-32P-201ENST00000411193 191 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 AC007098.1-201ENST00000420122 367 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 AC012306.1-201ENST00000423267 114 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.55□□□□□ -2.16
HOXC4P09017 AC112492.4-201ENST00000456549 352 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.55□□□□□ -2.16
HOXC4P09017 RNU6-764P-201ENST00000516396 105 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 Y_RNA.720-201ENST00000517166 92 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.55□□□□□ -2.16
HOXC4P09017 AC027288.2-201ENST00000553028 243 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 MIR4303-201ENST00000581299 66 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 AC136443.5-201ENST00000603741 370 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 AC100812.1-201ENST00000607622 580 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 U2.1-201ENST00000618978 145 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 AL078596.1-201ENST00000624856 447 ntBASIC1.55□□□□□ -2.16
HOXC4P09017 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.55□□□□□ -2.16
HOXC4P09017 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.55□□□□□ -2.16
HOXC4P09017 AC092268.1-201ENST00000342691 405 ntBASIC1.54□□□□□ -2.16
HOXC4P09017 Y_RNA.39-201ENST00000362620 98 ntBASIC1.54□□□□□ -2.16
HOXC4P09017 Y_RNA.145-201ENST00000363527 102 ntBASIC1.54□□□□□ -2.16
HOXC4P09017 Y_RNA.389-201ENST00000383924 113 ntBASIC1.54□□□□□ -2.16
HOXC4P09017 RNU6-142P-201ENST00000384019 107 ntBASIC1.54□□□□□ -2.16
HOXC4P09017 MIR29B2-201ENST00000385055 81 ntBASIC1.54□□□□□ -2.16
HOXC4P09017 SNORA12-201ENST00000391162 147 ntBASIC1.54□□□□□ -2.16
HOXC4P09017 RNA5SP212-201ENST00000391223 107 ntBASIC1.54□□□□□ -2.16
HOXC4P09017 AL033519.2-201ENST00000403958 392 ntBASIC1.54□□□□□ -2.16
HOXC4P09017 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.54□□□□□ -2.16
HOXC4P09017 RNU2-48P-201ENST00000410694 191 ntBASIC1.54□□□□□ -2.16
HOXC4P09017 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.54□□□□□ -2.16
HOXC4P09017 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.54□□□□□ -2.16
HOXC4P09017 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.54□□□□□ -2.16
HOXC4P09017 AC010469.2-201ENST00000496412 480 ntBASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 225.8 ms