Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RNU6-221P-201ENST00000459541 99 ntBASIC1.67□□□□□ -2.14
CDX1P47902 HMGB3P17-201ENST00000504195 649 ntBASIC1.67□□□□□ -2.14
CDX1P47902 HMGN1P13-201ENST00000505795 138 ntBASIC1.67□□□□□ -2.14
CDX1P47902 AC084364.2-201ENST00000546924 395 ntBASIC1.67□□□□□ -2.14
CDX1P47902 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.67□□□□□ -2.14
CDX1P47902 AC004584.2-201ENST00000570407 410 ntBASIC1.67□□□□□ -2.14
CDX1P47902 AL353149.1-201ENST00000610667 244 ntBASIC1.67□□□□□ -2.14
CDX1P47902 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.67□□□□□ -2.14
CDX1P47902 snoU2-30.2-201ENST00000362805 70 ntBASIC1.66□□□□□ -2.14
CDX1P47902 SNORA72.1-201ENST00000363485 129 ntBASIC1.66□□□□□ -2.14
CDX1P47902 RNU6-879P-201ENST00000364328 108 ntBASIC1.66□□□□□ -2.14
CDX1P47902 Y_RNA.358-201ENST00000365491 99 ntBASIC1.66□□□□□ -2.14
CDX1P47902 AL117342.1-201ENST00000404861 406 ntBASIC1.66□□□□□ -2.14
CDX1P47902 MIR1185-2-201ENST00000408687 86 ntBASIC1.66□□□□□ -2.14
CDX1P47902 snoU13.26-201ENST00000459452 105 ntBASIC1.66□□□□□ -2.14
CDX1P47902 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.66□□□□□ -2.14
CDX1P47902 RNU6-559P-201ENST00000516151 98 ntBASIC1.66□□□□□ -2.14
CDX1P47902 SNORA44.1-201ENST00000517031 108 ntBASIC1.66□□□□□ -2.14
CDX1P47902 AC025647.1-201ENST00000517879 253 ntBASIC1.66□□□□□ -2.14
CDX1P47902 UBE2V2P2-201ENST00000587677 504 ntBASIC1.66□□□□□ -2.14
CDX1P47902 AC113139.1-201ENST00000605049 239 ntBASIC1.66□□□□□ -2.14
CDX1P47902 AC103810.8-201ENST00000607347 118 ntBASIC1.66□□□□□ -2.14
CDX1P47902 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.66□□□□□ -2.14
CDX1P47902 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
CDX1P47902 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.65□□□□□ -2.14
CDX1P47902 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
CDX1P47902 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.65□□□□□ -2.15
CDX1P47902 RNU6-296P-201ENST00000384608 107 ntBASIC1.65□□□□□ -2.15
CDX1P47902 Y_RNA.557-201ENST00000384680 107 ntBASIC1.65□□□□□ -2.15
CDX1P47902 Y_RNA.595-201ENST00000410403 105 ntBASIC1.65□□□□□ -2.15
CDX1P47902 EIF1P2-201ENST00000428233 350 ntBASIC1.65□□□□□ -2.15
CDX1P47902 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.65□□□□□ -2.15
CDX1P47902 RPL36AP21-201ENST00000490372 323 ntBASIC1.65□□□□□ -2.15
CDX1P47902 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.65□□□□□ -2.15
CDX1P47902 AC022868.1-201ENST00000517767 391 ntBASIC1.65□□□□□ -2.15
CDX1P47902 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.65□□□□□ -2.15
CDX1P47902 MIR1244-1-201ENST00000612829 85 ntBASIC1.65□□□□□ -2.15
CDX1P47902 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.65□□□□□ -2.15
CDX1P47902 MIR1244-3-201ENST00000635744 85 ntBASIC1.65□□□□□ -2.15
CDX1P47902 MIR1244-2-201ENST00000636449 85 ntBASIC1.65□□□□□ -2.15
CDX1P47902 MIR1244-4-202ENST00000636813 85 ntBASIC1.65□□□□□ -2.15
CDX1P47902 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
CDX1P47902 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.65□□□□□ -2.15
CDX1P47902 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
CDX1P47902 SNORD114-1-201ENST00000362705 72 ntBASIC1.64□□□□□ -2.15
CDX1P47902 RNU6-1266P-201ENST00000362794 105 ntBASIC1.64□□□□□ -2.15
CDX1P47902 RNU6-1188P-201ENST00000363795 107 ntBASIC1.64□□□□□ -2.15
CDX1P47902 RNU6-99P-201ENST00000364721 107 ntBASIC1.64□□□□□ -2.15
CDX1P47902 SNORA64-201ENST00000384674 134 ntBASIC1.64□□□□□ -2.15
CDX1P47902 RNA5SP323-201ENST00000391094 133 ntBASIC1.64□□□□□ -2.15
CDX1P47902 Y_RNA.646-201ENST00000410980 101 ntBASIC1.64□□□□□ -2.15
CDX1P47902 RNU6-1001P-201ENST00000411265 100 ntBASIC1.64□□□□□ -2.15
CDX1P47902 RPL31P63-201ENST00000422565 375 ntBASIC1.64□□□□□ -2.15
CDX1P47902 AC245047.4-201ENST00000433189 144 ntBASIC1.64□□□□□ -2.15
CDX1P47902 AC069257.2-201ENST00000441819 155 ntBASIC1.64□□□□□ -2.15
CDX1P47902 AC112492.4-201ENST00000456549 352 ntBASIC1.64□□□□□ -2.15
CDX1P47902 RPL30P15-201ENST00000457129 321 ntBASIC1.64□□□□□ -2.15
CDX1P47902 MIR2053-201ENST00000459295 91 ntBASIC1.64□□□□□ -2.15
CDX1P47902 UBL5P3-201ENST00000475112 231 ntBASIC1.64□□□□□ -2.15
CDX1P47902 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC1.64□□□□□ -2.15
CDX1P47902 CYCSP23-201ENST00000519781 313 ntBASIC1.64□□□□□ -2.15
CDX1P47902 AK6P2-201ENST00000549020 471 ntBASIC1.64□□□□□ -2.15
CDX1P47902 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.64□□□□□ -2.15
CDX1P47902 AL356292.1-201ENST00000283110 373 ntBASIC1.63□□□□□ -2.15
CDX1P47902 RNU6-874P-201ENST00000362390 105 ntBASIC1.63□□□□□ -2.15
CDX1P47902 SNORA72.2-201ENST00000365028 127 ntBASIC1.63□□□□□ -2.15
CDX1P47902 Y_RNA.384-201ENST00000383909 102 ntBASIC1.63□□□□□ -2.15
CDX1P47902 RNU6-439P-201ENST00000384188 106 ntBASIC1.63□□□□□ -2.15
CDX1P47902 RNU6-310P-201ENST00000384655 107 ntBASIC1.63□□□□□ -2.15
CDX1P47902 MIR515-2-201ENST00000384883 83 ntBASIC1.63□□□□□ -2.15
CDX1P47902 MIR515-1-201ENST00000384884 83 ntBASIC1.63□□□□□ -2.15
CDX1P47902 AL445646.1-201ENST00000431784 216 ntBASIC1.63□□□□□ -2.15
CDX1P47902 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
CDX1P47902 HSPE1P9-201ENST00000440046 311 ntBASIC1.63□□□□□ -2.15
CDX1P47902 MTND4P18-201ENST00000447010 465 ntBASIC1.63□□□□□ -2.15
CDX1P47902 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.63□□□□□ -2.15
CDX1P47902 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.63□□□□□ -2.15
CDX1P47902 APOOP3-201ENST00000536787 586 ntBASIC1.63□□□□□ -2.15
CDX1P47902 MIR4801-201ENST00000582704 82 ntBASIC1.63□□□□□ -2.15
CDX1P47902 AC025253.1-201ENST00000613623 543 ntBASIC1.63□□□□□ -2.15
CDX1P47902 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.63□□□□□ -2.15
CDX1P47902 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.63□□□□□ -2.15
CDX1P47902 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
CDX1P47902 ZNF355P-201ENST00000427301 3216 ntBASIC1.62□□□□□ -2.15
CDX1P47902 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.62□□□□□ -2.15
CDX1P47902 RNU6-661P-201ENST00000362409 107 ntBASIC1.62□□□□□ -2.15
CDX1P47902 RNU6-414P-201ENST00000363705 104 ntBASIC1.62□□□□□ -2.15
CDX1P47902 Y_RNA.287-201ENST00000364853 94 ntBASIC1.62□□□□□ -2.15
CDX1P47902 Y_RNA.474-201ENST00000384341 102 ntBASIC1.62□□□□□ -2.15
CDX1P47902 MIR329-1-201ENST00000385028 80 ntBASIC1.62□□□□□ -2.15
CDX1P47902 MIR30A-201ENST00000385092 71 ntBASIC1.62□□□□□ -2.15
CDX1P47902 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.62□□□□□ -2.15
CDX1P47902 RNA5SP213-201ENST00000391031 106 ntBASIC1.62□□□□□ -2.15
CDX1P47902 RNA5SP467-201ENST00000391274 118 ntBASIC1.62□□□□□ -2.15
CDX1P47902 AL079342.1-201ENST00000401460 267 ntBASIC1.62□□□□□ -2.15
CDX1P47902 AC016909.1-201ENST00000415916 166 ntBASIC1.62□□□□□ -2.15
CDX1P47902 AC114482.1-201ENST00000418010 247 ntBASIC1.62□□□□□ -2.15
CDX1P47902 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.62□□□□□ -2.15
CDX1P47902 UQCRBP2-201ENST00000447827 297 ntBASIC1.62□□□□□ -2.15
CDX1P47902 Y_RNA.653-201ENST00000459091 95 ntBASIC1.62□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 213.1 ms