Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC233981.2-201ENST00000611524 1614 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 RNA5SP276-201ENST00000362580 94 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 RNU6-457P-201ENST00000363999 107 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 Y_RNA.364-201ENST00000365532 101 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.6□□□□□ -2.15
HOXC4P09017 RNU6-968P-201ENST00000384076 107 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 Y_RNA.428-201ENST00000384078 102 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 RNU6-708P-201ENST00000384217 107 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 RNU6-1160P-201ENST00000384546 104 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 Y_RNA.577-201ENST00000384794 101 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 MIR549A-201ENST00000385268 96 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 SNORA12.2-201ENST00000391040 156 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 snosnR66.1-201ENST00000391095 99 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 MRPL42P3-201ENST00000401492 326 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 RNA5SP390-201ENST00000410191 113 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 RNU6-1245P-201ENST00000411130 106 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 AC108667.1-201ENST00000428618 249 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 AC244670.1-201ENST00000436879 112 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 OR2AQ1P-201ENST00000451972 200 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 Y_RNA.638-201ENST00000459374 113 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 TOMM22P6-201ENST00000465035 409 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC1.6□□□□□ -2.15
HOXC4P09017 AC021146.2-201ENST00000504736 556 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 RNU6-327P-201ENST00000516270 127 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 RNU6-1046P-201ENST00000516538 107 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 RNU6-988P-201ENST00000519081 107 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 AL590705.4-201ENST00000532209 134 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 AC004584.2-201ENST00000570407 410 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 MIR4680-201ENST00000580906 66 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.6□□□□□ -2.15
HOXC4P09017 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.6□□□□□ -2.15
HOXC4P09017 AC104695.3-201ENST00000604052 296 ntBASIC1.6□□□□□ -2.15
HOXC4P09017 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.6□□□□□ -2.15
HOXC4P09017 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
HOXC4P09017 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
HOXC4P09017 RNU6-222P-201ENST00000362438 107 ntBASIC1.59□□□□□ -2.15
HOXC4P09017 RNU6-212P-201ENST00000362642 104 ntBASIC1.59□□□□□ -2.15
HOXC4P09017 RNU5B-2P-201ENST00000363036 113 ntBASIC1.59□□□□□ -2.15
HOXC4P09017 RNU6-1141P-201ENST00000364520 107 ntBASIC1.59□□□□□ -2.15
HOXC4P09017 RNU6-450P-201ENST00000364654 107 ntBASIC1.59□□□□□ -2.15
HOXC4P09017 RNU4-42P-201ENST00000364738 142 ntBASIC1.59□□□□□ -2.15
HOXC4P09017 RNU6-1286P-201ENST00000383871 107 ntBASIC1.59□□□□□ -2.15
HOXC4P09017 U8.10-201ENST00000384260 133 ntBASIC1.59□□□□□ -2.15
HOXC4P09017 Y_RNA.527-201ENST00000384573 102 ntBASIC1.59□□□□□ -2.15
HOXC4P09017 RNU6-1222P-201ENST00000384615 107 ntBASIC1.59□□□□□ -2.15
HOXC4P09017 MIR29C-201ENST00000385231 88 ntBASIC1.59□□□□□ -2.15
HOXC4P09017 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.59□□□□□ -2.15
HOXC4P09017 BX510359.4-201ENST00000423750 193 ntBASIC1.59□□□□□ -2.15
HOXC4P09017 AL445305.1-201ENST00000432577 575 ntBASIC1.59□□□□□ -2.15
HOXC4P09017 MTND2P29-201ENST00000438595 412 ntBASIC1.59□□□□□ -2.15
HOXC4P09017 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.59□□□□□ -2.15
HOXC4P09017 RPL23AP6-201ENST00000446637 472 ntBASIC1.59□□□□□ -2.15
HOXC4P09017 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
HOXC4P09017 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.59□□□□□ -2.15
HOXC4P09017 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.59□□□□□ -2.15
HOXC4P09017 RNU6-667P-201ENST00000517186 102 ntBASIC1.59□□□□□ -2.15
HOXC4P09017 HSBP1P1-201ENST00000555205 166 ntBASIC1.59□□□□□ -2.15
HOXC4P09017 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.59□□□□□ -2.15
HOXC4P09017 AL670379.2-201ENST00000604983 252 ntBASIC1.59□□□□□ -2.15
HOXC4P09017 PART1_1.1-201ENST00000611761 217 ntBASIC1.59□□□□□ -2.15
HOXC4P09017 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.59□□□□□ -2.15
HOXC4P09017 MIR4272-201ENST00000635924 64 ntBASIC1.59□□□□□ -2.15
HOXC4P09017 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.16
HOXC4P09017 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
HOXC4P09017 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
HOXC4P09017 RNU6-655P-201ENST00000362858 107 ntBASIC1.58□□□□□ -2.16
HOXC4P09017 MIR32-201ENST00000384965 70 ntBASIC1.58□□□□□ -2.16
HOXC4P09017 RNU2-23P-201ENST00000410545 195 ntBASIC1.58□□□□□ -2.16
HOXC4P09017 RN7SKP61-201ENST00000410642 295 ntBASIC1.58□□□□□ -2.16
HOXC4P09017 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.58□□□□□ -2.16
HOXC4P09017 AC245102.2-201ENST00000448956 180 ntBASIC1.58□□□□□ -2.16
HOXC4P09017 AC087477.1-201ENST00000465747 340 ntBASIC1.58□□□□□ -2.16
HOXC4P09017 SNORA25.10-201ENST00000515926 124 ntBASIC1.58□□□□□ -2.16
HOXC4P09017 RNU5F-2P-201ENST00000516066 82 ntBASIC1.58□□□□□ -2.16
HOXC4P09017 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
HOXC4P09017 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.58□□□□□ -2.16
HOXC4P09017 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.58□□□□□ -2.16
HOXC4P09017 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.58□□□□□ -2.16
HOXC4P09017 MIR5188-201ENST00000583467 113 ntBASIC1.58□□□□□ -2.16
HOXC4P09017 AC006504.6-201ENST00000590142 199 ntBASIC1.58□□□□□ -2.16
HOXC4P09017 AC008737.2-201ENST00000599446 118 ntBASIC1.58□□□□□ -2.16
HOXC4P09017 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.58□□□□□ -2.16
HOXC4P09017 AL773524.1-201ENST00000614065 229 ntBASIC1.58□□□□□ -2.16
HOXC4P09017 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.58□□□□□ -2.16
HOXC4P09017 AL606534.2-204ENST00000635008 178 ntBASIC1.58□□□□□ -2.16
HOXC4P09017 Y_RNA.106-201ENST00000363189 100 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 Y_RNA.158-201ENST00000363651 101 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 RNU1-115P-201ENST00000365329 160 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 Y_RNA.358-201ENST00000365491 99 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 RNU6-639P-201ENST00000384074 107 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 RNU6-611P-201ENST00000384276 104 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 MIR517C-201ENST00000385103 95 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 RNU6-700P-201ENST00000391043 107 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 RNA5SP465-201ENST00000391195 109 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 MIR190B-201ENST00000401119 79 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 RN7SKP101-201ENST00000411376 320 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 AC244636.1-201ENST00000421152 228 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 AL590135.1-201ENST00000422215 156 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 AC019205.3-201ENST00000424573 156 ntBASIC1.57□□□□□ -2.16
HOXC4P09017 MTCYBP10-201ENST00000424905 650 ntBASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 181.9 ms