Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.71□□□□□ -2.14
CDX1P47902 AC092881.1-201ENST00000638218 2733 ntBASIC1.7□□□□□ -2.14
CDX1P47902 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.7□□□□□ -2.14
CDX1P47902 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.7□□□□□ -2.14
CDX1P47902 RNU6-222P-201ENST00000362438 107 ntBASIC1.7□□□□□ -2.14
CDX1P47902 RNA5SP160-201ENST00000364866 120 ntBASIC1.7□□□□□ -2.14
CDX1P47902 Y_RNA.390-201ENST00000383932 102 ntBASIC1.7□□□□□ -2.14
CDX1P47902 Y_RNA.415-201ENST00000384012 112 ntBASIC1.7□□□□□ -2.14
CDX1P47902 RNU2-7P-201ENST00000410794 178 ntBASIC1.7□□□□□ -2.14
CDX1P47902 RNU4-14P-201ENST00000410858 122 ntBASIC1.7□□□□□ -2.14
CDX1P47902 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.7□□□□□ -2.14
CDX1P47902 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.7□□□□□ -2.14
CDX1P47902 AC099677.2-201ENST00000436385 175 ntBASIC1.7□□□□□ -2.14
CDX1P47902 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC1.7□□□□□ -2.14
CDX1P47902 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.7□□□□□ -2.14
CDX1P47902 AC091179.3-201ENST00000474761 144 ntBASIC1.7□□□□□ -2.14
CDX1P47902 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.7□□□□□ -2.14
CDX1P47902 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.7□□□□□ -2.14
CDX1P47902 RNU6-1114P-201ENST00000516022 107 ntBASIC1.7□□□□□ -2.14
CDX1P47902 IGKV3-31-201ENST00000523109 329 ntBASIC1.7□□□□□ -2.14
CDX1P47902 GNAI2P1-201ENST00000541815 315 ntBASIC1.7□□□□□ -2.14
CDX1P47902 AC090617.3-201ENST00000573670 475 ntBASIC1.7□□□□□ -2.14
CDX1P47902 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.7□□□□□ -2.14
CDX1P47902 MIR5690-201ENST00000583739 73 ntBASIC1.7□□□□□ -2.14
CDX1P47902 MIR5002-201ENST00000584713 97 ntBASIC1.7□□□□□ -2.14
CDX1P47902 MZT1P2-201ENST00000604387 248 ntBASIC1.7□□□□□ -2.14
CDX1P47902 RBM11P1-201ENST00000604951 799 ntBASIC1.7□□□□□ -2.14
CDX1P47902 AC092794.2-201ENST00000620933 563 ntBASIC1.7□□□□□ -2.14
CDX1P47902 AL669831.3-213ENST00000636676 183 ntBASIC1.7□□□□□ -2.14
CDX1P47902 MIR548B-201ENST00000385247 97 ntBASIC1.69□□□□□ -2.14
CDX1P47902 RNA5SP504-201ENST00000410676 117 ntBASIC1.69□□□□□ -2.14
CDX1P47902 RNA5SP489-201ENST00000410986 109 ntBASIC1.69□□□□□ -2.14
CDX1P47902 RNU6-370P-201ENST00000411008 104 ntBASIC1.69□□□□□ -2.14
CDX1P47902 EBAG9P1-201ENST00000418955 543 ntBASIC1.69□□□□□ -2.14
CDX1P47902 AC092423.1-201ENST00000430165 186 ntBASIC1.69□□□□□ -2.14
CDX1P47902 AL121890.1-201ENST00000435457 205 ntBASIC1.69□□□□□ -2.14
CDX1P47902 HMGN2P34-201ENST00000437647 269 ntBASIC1.69□□□□□ -2.14
CDX1P47902 AC010095.1-201ENST00000443543 144 ntBASIC1.69□□□□□ -2.14
CDX1P47902 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.69□□□□□ -2.14
CDX1P47902 AC010409.1-201ENST00000487382 476 ntBASIC1.69□□□□□ -2.14
CDX1P47902 SCARNA16.3-201ENST00000516595 184 ntBASIC1.69□□□□□ -2.14
CDX1P47902 RNU6-107P-201ENST00000516643 102 ntBASIC1.69□□□□□ -2.14
CDX1P47902 SNORA31.17-201ENST00000516953 127 ntBASIC1.69□□□□□ -2.14
CDX1P47902 RNU6-1213P-201ENST00000517075 94 ntBASIC1.69□□□□□ -2.14
CDX1P47902 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.69□□□□□ -2.14
CDX1P47902 AC093023.1-201ENST00000547375 507 ntBASIC1.69□□□□□ -2.14
CDX1P47902 AC022254.1-201ENST00000567857 235 ntBASIC1.69□□□□□ -2.14
CDX1P47902 AC005730.3-201ENST00000583067 366 ntBASIC1.69□□□□□ -2.14
CDX1P47902 AC010900.2-201ENST00000604508 210 ntBASIC1.69□□□□□ -2.14
CDX1P47902 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.69□□□□□ -2.14
CDX1P47902 AL359757.2-201ENST00000624309 274 ntBASIC1.69□□□□□ -2.14
CDX1P47902 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
CDX1P47902 MTND5P35-201ENST00000557537 1720 ntBASIC1.69□□□□□ -2.14
CDX1P47902 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
CDX1P47902 RNU6-112P-201ENST00000363599 104 ntBASIC1.68□□□□□ -2.14
CDX1P47902 U3.8-201ENST00000363675 217 ntBASIC1.68□□□□□ -2.14
CDX1P47902 RNU6-1019P-201ENST00000364424 107 ntBASIC1.68□□□□□ -2.14
CDX1P47902 RNU6-1283P-201ENST00000365314 105 ntBASIC1.68□□□□□ -2.14
CDX1P47902 Y_RNA.364-201ENST00000365532 101 ntBASIC1.68□□□□□ -2.14
CDX1P47902 RNU6-281P-201ENST00000384212 103 ntBASIC1.68□□□□□ -2.14
CDX1P47902 RNU1-139P-201ENST00000391307 165 ntBASIC1.68□□□□□ -2.14
CDX1P47902 MIR1261-201ENST00000408659 82 ntBASIC1.68□□□□□ -2.14
CDX1P47902 AC008134.1-201ENST00000420943 193 ntBASIC1.68□□□□□ -2.14
CDX1P47902 RPL17P19-201ENST00000489069 552 ntBASIC1.68□□□□□ -2.14
CDX1P47902 Y_RNA.683-201ENST00000516508 93 ntBASIC1.68□□□□□ -2.14
CDX1P47902 RNU6-264P-201ENST00000517134 104 ntBASIC1.68□□□□□ -2.14
CDX1P47902 AC105029.1-201ENST00000520250 669 ntBASIC1.68□□□□□ -2.14
CDX1P47902 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
CDX1P47902 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.68□□□□□ -2.14
CDX1P47902 MIR3122-201ENST00000577243 73 ntBASIC1.68□□□□□ -2.14
CDX1P47902 U2.15-201ENST00000611544 191 ntBASIC1.68□□□□□ -2.14
CDX1P47902 U2.16-201ENST00000613119 191 ntBASIC1.68□□□□□ -2.14
CDX1P47902 U2.12-201ENST00000613778 191 ntBASIC1.68□□□□□ -2.14
CDX1P47902 U2.20-201ENST00000613956 192 ntBASIC1.68□□□□□ -2.14
CDX1P47902 U2.9-201ENST00000615427 191 ntBASIC1.68□□□□□ -2.14
CDX1P47902 U2.11-201ENST00000616345 191 ntBASIC1.68□□□□□ -2.14
CDX1P47902 U2.2-201ENST00000616535 191 ntBASIC1.68□□□□□ -2.14
CDX1P47902 U2.3-201ENST00000617785 191 ntBASIC1.68□□□□□ -2.14
CDX1P47902 U2.19-201ENST00000618602 191 ntBASIC1.68□□□□□ -2.14
CDX1P47902 RNU2-1-201ENST00000618664 191 ntBASIC1.68□□□□□ -2.14
CDX1P47902 U2.6-201ENST00000619225 191 ntBASIC1.68□□□□□ -2.14
CDX1P47902 U2.5-201ENST00000619465 191 ntBASIC1.68□□□□□ -2.14
CDX1P47902 U2.10-201ENST00000620268 191 ntBASIC1.68□□□□□ -2.14
CDX1P47902 MIR338-201ENST00000636369 67 ntBASIC1.68□□□□□ -2.14
CDX1P47902 AC010615.1-201ENST00000594254 1764 ntBASIC1.67□□□□□ -2.14
CDX1P47902 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.67□□□□□ -2.14
CDX1P47902 Y_RNA.142-201ENST00000363491 102 ntBASIC1.67□□□□□ -2.14
CDX1P47902 RNU6-1240P-201ENST00000365155 104 ntBASIC1.67□□□□□ -2.14
CDX1P47902 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.67□□□□□ -2.14
CDX1P47902 RNU6-417P-201ENST00000384712 107 ntBASIC1.67□□□□□ -2.14
CDX1P47902 MIR520A-201ENST00000384862 85 ntBASIC1.67□□□□□ -2.14
CDX1P47902 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
CDX1P47902 RNU6-1304P-201ENST00000411374 106 ntBASIC1.67□□□□□ -2.14
CDX1P47902 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.67□□□□□ -2.14
CDX1P47902 CST2P1-201ENST00000425770 87 ntBASIC1.67□□□□□ -2.14
CDX1P47902 UBE2V1P7-201ENST00000446395 340 ntBASIC1.67□□□□□ -2.14
CDX1P47902 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.67□□□□□ -2.14
CDX1P47902 NDUFB4P10-201ENST00000452541 359 ntBASIC1.67□□□□□ -2.14
CDX1P47902 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.67□□□□□ -2.14
CDX1P47902 snoU13.15-201ENST00000459407 104 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 164.6 ms