Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.09□□□□□ -2.39
TTC28Q96AY4 Y_RNA.37-201ENST00000362606 108 ntBASIC0.09□□□□□ -2.4
TTC28Q96AY4 RNU6-792P-201ENST00000363490 107 ntBASIC0.09□□□□□ -2.4
TTC28Q96AY4 Y_RNA.396-201ENST00000383949 103 ntBASIC0.09□□□□□ -2.4
TTC28Q96AY4 Y_RNA.397-201ENST00000383950 98 ntBASIC0.09□□□□□ -2.4
TTC28Q96AY4 RNY1P8-201ENST00000383970 114 ntBASIC0.09□□□□□ -2.4
TTC28Q96AY4 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC0.09□□□□□ -2.4
TTC28Q96AY4 RNU6-293P-201ENST00000411259 106 ntBASIC0.09□□□□□ -2.4
TTC28Q96AY4 RNA5SP111-201ENST00000411386 101 ntBASIC0.09□□□□□ -2.4
TTC28Q96AY4 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC0.09□□□□□ -2.4
TTC28Q96AY4 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC0.09□□□□□ -2.4
TTC28Q96AY4 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC0.09□□□□□ -2.4
TTC28Q96AY4 snoU13.30-201ENST00000458951 104 ntBASIC0.09□□□□□ -2.4
TTC28Q96AY4 RPS23P5-201ENST00000495419 428 ntBASIC0.09□□□□□ -2.4
TTC28Q96AY4 AC093534.1-201ENST00000504977 132 ntBASIC0.09□□□□□ -2.4
TTC28Q96AY4 AC104136.1-201ENST00000512969 394 ntBASIC0.09□□□□□ -2.4
TTC28Q96AY4 MTCO3P28-201ENST00000513351 515 ntBASIC0.09□□□□□ -2.4
TTC28Q96AY4 RNU5F-4P-201ENST00000516581 114 ntBASIC0.09□□□□□ -2.4
TTC28Q96AY4 DEFB130C-202ENST00000530001 230 ntBASIC0.09□□□□□ -2.4
TTC28Q96AY4 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.09□□□□□ -2.4
TTC28Q96AY4 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC0.09□□□□□ -2.4
TTC28Q96AY4 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC0.09□□□□□ -2.4
TTC28Q96AY4 PRELID3BP2-201ENST00000605362 201 ntBASIC0.09□□□□□ -2.4
TTC28Q96AY4 AC097065.2-201ENST00000608159 533 ntBASIC0.09□□□□□ -2.4
TTC28Q96AY4 U6.42-201ENST00000618440 107 ntBASIC0.09□□□□□ -2.4
TTC28Q96AY4 AP000943.4-201ENST00000622912 357 ntBASIC0.09□□□□□ -2.4
TTC28Q96AY4 SNORD115-2-201ENST00000362842 82 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 U3.9-201ENST00000363823 204 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC0.08□□□□□ -2.4
TTC28Q96AY4 AL008629.1-201ENST00000438615 184 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 MTCYBP42-201ENST00000444653 1130 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 RNU7-34P-201ENST00000459394 64 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 AC010531.2-201ENST00000465012 153 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 AC108740.1-201ENST00000498629 225 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 AC079395.1-201ENST00000510981 262 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 AC112206.4-201ENST00000515142 405 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC0.08□□□□□ -2.4
TTC28Q96AY4 AC027449.1-201ENST00000608890 407 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 AC116165.2-201ENST00000616705 206 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 AC093875.1-201ENST00000623688 504 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC0.08□□□□□ -2.4
TTC28Q96AY4 RNU4-79P-201ENST00000362764 141 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 RNU6-354P-201ENST00000383862 107 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 RNU6-610P-201ENST00000384264 107 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 Y_RNA.483-201ENST00000384380 101 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 MT-TQ-201ENST00000387372 72 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 RNU6-735P-201ENST00000410612 107 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 MTCO1P17-201ENST00000411522 491 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC0.08□□□□□ -2.4
TTC28Q96AY4 MLLT10P1-201ENST00000418346 262 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC0.08□□□□□ -2.4
TTC28Q96AY4 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC0.08□□□□□ -2.4
TTC28Q96AY4 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC0.08□□□□□ -2.4
TTC28Q96AY4 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC0.08□□□□□ -2.4
TTC28Q96AY4 AC107297.1-201ENST00000459991 176 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.08□□□□□ -2.4
TTC28Q96AY4 RNA5SP216-201ENST00000516111 123 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 RNU6-922P-201ENST00000516753 99 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 RNU6-850P-201ENST00000516934 103 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 SCARNA16.5-201ENST00000517114 183 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC0.08□□□□□ -2.4
TTC28Q96AY4 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC0.08□□□□□ -2.4
TTC28Q96AY4 ZNF321P-202ENST00000550843 495 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC0.08□□□□□ -2.4
TTC28Q96AY4 AC092447.9-201ENST00000603395 144 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.08□□□□□ -2.4
TTC28Q96AY4 AC026585.1-201ENST00000619582 524 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 SNORD3E-202ENST00000627253 216 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC0.08□□□□□ -2.4
TTC28Q96AY4 MTND4P5-201ENST00000435821 1374 ntBASIC0.08□□□□□ -2.4
TTC28Q96AY4 SNORD114-5-201ENST00000362928 70 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 RNA5SP128-201ENST00000365305 116 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 MIR19A-201ENST00000384878 82 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 SNORA26.3-201ENST00000391119 136 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 SNORA75.2-201ENST00000391138 150 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 SNORA75.3-201ENST00000391231 150 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC0.07□□□□□ -2.4
TTC28Q96AY4 NDUFB1P2-201ENST00000449477 176 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 RNA5SP484-201ENST00000458857 111 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 RNU6-1041P-201ENST00000516254 102 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 RNU6-677P-201ENST00000516914 101 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 AP002004.2-201ENST00000531656 154 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 AC025423.5-201ENST00000550230 219 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 MTND3P13-201ENST00000574391 343 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 VN1R87P-201ENST00000596706 487 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 MIR548AZ-201ENST00000616567 95 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 7SK.10-201ENST00000621414 298 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 AL603839.4-201ENST00000624658 1005 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 RNU6-1285P-201ENST00000363480 105 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 RNU6-511P-201ENST00000363496 107 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 Y_RNA.326-201ENST00000365176 113 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 Y_RNA.365-201ENST00000365537 102 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 Y_RNA.426-201ENST00000384068 113 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 RNU6-348P-201ENST00000384386 107 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 Y_RNA.564-201ENST00000384708 106 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 MIR578-201ENST00000384828 96 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.07□□□□□ -2.4
TTC28Q96AY4 MIR548L-201ENST00000408303 86 ntBASIC0.07□□□□□ -2.4
TTC28Q96AY4 SSR1P2-201ENST00000415208 787 ntBASIC0.07□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms