Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 Y_RNA.670-201ENST00000516255 105 ntBASIC1.78□□□□□ -2.12
CDX1P47902 RNU4ATAC7P-201ENST00000516280 125 ntBASIC1.78□□□□□ -2.12
CDX1P47902 RNU6-344P-201ENST00000516635 111 ntBASIC1.78□□□□□ -2.12
CDX1P47902 Y_RNA.706-201ENST00000516933 99 ntBASIC1.78□□□□□ -2.12
CDX1P47902 AC027288.2-201ENST00000553028 243 ntBASIC1.78□□□□□ -2.12
CDX1P47902 AC104581.2-201ENST00000572227 430 ntBASIC1.78□□□□□ -2.12
CDX1P47902 MIR1273D-201ENST00000577266 86 ntBASIC1.78□□□□□ -2.12
CDX1P47902 AL109918.3-201ENST00000603072 338 ntBASIC1.78□□□□□ -2.12
CDX1P47902 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.78□□□□□ -2.12
CDX1P47902 AC012493.3-201ENST00000604494 112 ntBASIC1.78□□□□□ -2.12
CDX1P47902 AC009229.3-201ENST00000608056 282 ntBASIC1.78□□□□□ -2.12
CDX1P47902 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.78□□□□□ -2.12
CDX1P47902 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.78□□□□□ -2.12
CDX1P47902 Y_RNA.88-201ENST00000363029 99 ntBASIC1.77□□□□□ -2.13
CDX1P47902 U8.2-201ENST00000363156 134 ntBASIC1.77□□□□□ -2.13
CDX1P47902 RNU5F-3P-201ENST00000363767 117 ntBASIC1.77□□□□□ -2.13
CDX1P47902 RNU6-873P-201ENST00000363833 107 ntBASIC1.77□□□□□ -2.13
CDX1P47902 Y_RNA.184-201ENST00000363884 108 ntBASIC1.77□□□□□ -2.13
CDX1P47902 RNU6-280P-201ENST00000364145 104 ntBASIC1.77□□□□□ -2.13
CDX1P47902 MIR586-201ENST00000385035 97 ntBASIC1.77□□□□□ -2.13
CDX1P47902 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.77□□□□□ -2.13
CDX1P47902 NCOR1P3-201ENST00000420479 303 ntBASIC1.77□□□□□ -2.13
CDX1P47902 OOSP1P1-201ENST00000423265 274 ntBASIC1.77□□□□□ -2.13
CDX1P47902 MTCO3P29-201ENST00000432119 779 ntBASIC1.77□□□□□ -2.13
CDX1P47902 RPL23AP50-201ENST00000434149 455 ntBASIC1.77□□□□□ -2.13
CDX1P47902 RPL23AP7-203ENST00000449021 469 ntBASIC1.77□□□□□ -2.13
CDX1P47902 ATP5J2P3-201ENST00000451550 258 ntBASIC1.77□□□□□ -2.13
CDX1P47902 AL021397.1-201ENST00000451806 248 ntBASIC1.77□□□□□ -2.13
CDX1P47902 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.77□□□□□ -2.13
CDX1P47902 YWHAEP4-201ENST00000505390 198 ntBASIC1.77□□□□□ -2.13
CDX1P47902 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.77□□□□□ -2.13
CDX1P47902 RNU2-34P-201ENST00000516534 121 ntBASIC1.77□□□□□ -2.13
CDX1P47902 UBL5P4-201ENST00000562584 236 ntBASIC1.77□□□□□ -2.13
CDX1P47902 MIR5094-201ENST00000578766 85 ntBASIC1.77□□□□□ -2.13
CDX1P47902 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.77□□□□□ -2.13
CDX1P47902 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.77□□□□□ -2.13
CDX1P47902 AL355802.3-201ENST00000607571 545 ntBASIC1.77□□□□□ -2.13
CDX1P47902 AC100812.1-201ENST00000607622 580 ntBASIC1.77□□□□□ -2.13
CDX1P47902 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.77□□□□□ -2.13
CDX1P47902 SNORD11B-201ENST00000607707 90 ntBASIC1.77□□□□□ -2.13
CDX1P47902 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.77□□□□□ -2.13
CDX1P47902 WT1-AS_8.1-201ENST00000615200 275 ntBASIC1.77□□□□□ -2.13
CDX1P47902 AC005296.1-201ENST00000616145 209 ntBASIC1.77□□□□□ -2.13
CDX1P47902 DUXAP9-208ENST00000622815 614 ntBASIC1.77□□□□□ -2.13
CDX1P47902 AL078596.1-201ENST00000624856 447 ntBASIC1.77□□□□□ -2.13
CDX1P47902 AC099654.5-201ENST00000636479 350 ntBASIC1.77□□□□□ -2.13
CDX1P47902 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC1.77□□□□□ -2.13
CDX1P47902 Y_RNA.166-201ENST00000363730 102 ntBASIC1.76□□□□□ -2.13
CDX1P47902 RNU6-975P-201ENST00000384296 105 ntBASIC1.76□□□□□ -2.13
CDX1P47902 RNU6-700P-201ENST00000391043 107 ntBASIC1.76□□□□□ -2.13
CDX1P47902 RNU6-159P-201ENST00000391080 106 ntBASIC1.76□□□□□ -2.13
CDX1P47902 SUMO2P12-201ENST00000405924 140 ntBASIC1.76□□□□□ -2.13
CDX1P47902 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.76□□□□□ -2.13
CDX1P47902 RPS15AP28-201ENST00000435088 386 ntBASIC1.76□□□□□ -2.13
CDX1P47902 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC1.76□□□□□ -2.13
CDX1P47902 MTND3P10-201ENST00000450967 341 ntBASIC1.76□□□□□ -2.13
CDX1P47902 RNU7-57P-201ENST00000459540 60 ntBASIC1.76□□□□□ -2.13
CDX1P47902 HMGN2P9-201ENST00000476875 229 ntBASIC1.76□□□□□ -2.13
CDX1P47902 RPL7P42-201ENST00000481005 679 ntBASIC1.76□□□□□ -2.13
CDX1P47902 RNU1-41P-201ENST00000516161 162 ntBASIC1.76□□□□□ -2.13
CDX1P47902 RNU6-1041P-201ENST00000516254 102 ntBASIC1.76□□□□□ -2.13
CDX1P47902 RNU1-48P-201ENST00000516400 162 ntBASIC1.76□□□□□ -2.13
CDX1P47902 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.76□□□□□ -2.13
CDX1P47902 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.76□□□□□ -2.13
CDX1P47902 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.76□□□□□ -2.13
CDX1P47902 AC008749.1-201ENST00000597650 306 ntBASIC1.76□□□□□ -2.13
CDX1P47902 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC1.76□□□□□ -2.13
CDX1P47902 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC1.76□□□□□ -2.13
CDX1P47902 AC022306.2-201ENST00000617563 647 ntBASIC1.76□□□□□ -2.13
CDX1P47902 MIR6766-201ENST00000622641 72 ntBASIC1.76□□□□□ -2.13
CDX1P47902 AC099654.14-201ENST00000638599 341 ntBASIC1.76□□□□□ -2.13
CDX1P47902 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
CDX1P47902 RNU1-62P-201ENST00000362599 164 ntBASIC1.75□□□□□ -2.13
CDX1P47902 SNORD81.2-201ENST00000365153 76 ntBASIC1.75□□□□□ -2.13
CDX1P47902 SNORA11.4-201ENST00000408823 129 ntBASIC1.75□□□□□ -2.13
CDX1P47902 RN7SKP223-201ENST00000410582 62 ntBASIC1.75□□□□□ -2.13
CDX1P47902 AC138393.2-201ENST00000414742 246 ntBASIC1.75□□□□□ -2.13
CDX1P47902 PDCL2P1-201ENST00000419302 352 ntBASIC1.75□□□□□ -2.13
CDX1P47902 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC1.75□□□□□ -2.13
CDX1P47902 AC098614.3-201ENST00000438957 440 ntBASIC1.75□□□□□ -2.13
CDX1P47902 AP000870.1-201ENST00000472927 406 ntBASIC1.75□□□□□ -2.13
CDX1P47902 RNU6-856P-201ENST00000516959 98 ntBASIC1.75□□□□□ -2.13
CDX1P47902 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.75□□□□□ -2.13
CDX1P47902 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.75□□□□□ -2.13
CDX1P47902 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.75□□□□□ -2.13
CDX1P47902 MIR4648-201ENST00000580107 72 ntBASIC1.75□□□□□ -2.13
CDX1P47902 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC1.75□□□□□ -2.13
CDX1P47902 AL096840.1-201ENST00000603287 93 ntBASIC1.75□□□□□ -2.13
CDX1P47902 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.75□□□□□ -2.13
CDX1P47902 MIR6132-201ENST00000622083 109 ntBASIC1.75□□□□□ -2.13
CDX1P47902 MIR6873-201ENST00000622788 63 ntBASIC1.75□□□□□ -2.13
CDX1P47902 TPTEP1-208ENST00000636884 213 ntBASIC1.75□□□□□ -2.13
CDX1P47902 MTND4P12-201ENST00000498999 1377 ntBASIC1.74□□□□□ -2.13
CDX1P47902 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
CDX1P47902 RNU6-862P-201ENST00000362804 105 ntBASIC1.74□□□□□ -2.13
CDX1P47902 RNY1P16-201ENST00000363063 111 ntBASIC1.74□□□□□ -2.13
CDX1P47902 RNU6-727P-201ENST00000363592 107 ntBASIC1.74□□□□□ -2.13
CDX1P47902 Y_RNA.179-201ENST00000363844 90 ntBASIC1.74□□□□□ -2.13
CDX1P47902 RNU6-1235P-201ENST00000384559 107 ntBASIC1.74□□□□□ -2.13
CDX1P47902 RNU6-331P-201ENST00000384724 107 ntBASIC1.74□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 186.5 ms