Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC39Q9UFE4 AC244505.4-201ENST00000434905 287 ntBASIC3.83□□□□□ -1.8
CCDC39Q9UFE4 SSXP5-201ENST00000443473 287 ntBASIC3.83□□□□□ -1.8
CCDC39Q9UFE4 AC025518.1-201ENST00000479856 347 ntBASIC3.83□□□□□ -1.8
CCDC39Q9UFE4 SCARNA8-201ENST00000515924 131 ntBASIC3.83□□□□□ -1.8
CCDC39Q9UFE4 RNA5SP54-201ENST00000516951 92 ntBASIC3.83□□□□□ -1.8
CCDC39Q9UFE4 AC026403.1-201ENST00000518938 295 ntBASIC3.83□□□□□ -1.8
CCDC39Q9UFE4 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC39Q9UFE4 CYCSP39-201ENST00000565821 309 ntBASIC3.83□□□□□ -1.8
CCDC39Q9UFE4 MTND5P34-201ENST00000568888 325 ntBASIC3.83□□□□□ -1.8
CCDC39Q9UFE4 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.83□□□□□ -1.8
CCDC39Q9UFE4 U7.2-201ENST00000607576 63 ntBASIC3.83□□□□□ -1.8
CCDC39Q9UFE4 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC3.83□□□□□ -1.8
CCDC39Q9UFE4 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.83□□□□□ -1.8
CCDC39Q9UFE4 AC039056.2-201ENST00000622261 511 ntBASIC3.83□□□□□ -1.8
CCDC39Q9UFE4 AC012442.3-202ENST00000636742 206 ntBASIC3.83□□□□□ -1.8
CCDC39Q9UFE4 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC39Q9UFE4 Y_RNA.179-201ENST00000363844 90 ntBASIC3.82□□□□□ -1.8
CCDC39Q9UFE4 RNU1-140P-201ENST00000365040 165 ntBASIC3.82□□□□□ -1.8
CCDC39Q9UFE4 DYNLT3P1-201ENST00000378574 347 ntBASIC3.82□□□□□ -1.8
CCDC39Q9UFE4 RNU6-1310P-201ENST00000384153 107 ntBASIC3.82□□□□□ -1.8
CCDC39Q9UFE4 Y_RNA.572-201ENST00000384757 98 ntBASIC3.82□□□□□ -1.8
CCDC39Q9UFE4 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
CCDC39Q9UFE4 SNORD17-201ENST00000390930 237 ntBASIC3.82□□□□□ -1.8
CCDC39Q9UFE4 RNU6-1197P-201ENST00000391183 107 ntBASIC3.82□□□□□ -1.8
CCDC39Q9UFE4 SNORA48.8-201ENST00000391324 134 ntBASIC3.82□□□□□ -1.8
CCDC39Q9UFE4 snoU13.6-201ENST00000458785 104 ntBASIC3.82□□□□□ -1.8
CCDC39Q9UFE4 RN7SL75P-201ENST00000461926 281 ntBASIC3.82□□□□□ -1.8
CCDC39Q9UFE4 SNRPGP7-201ENST00000469016 106 ntBASIC3.82□□□□□ -1.8
CCDC39Q9UFE4 AC093663.1-201ENST00000497190 394 ntBASIC3.82□□□□□ -1.8
CCDC39Q9UFE4 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC39Q9UFE4 RNU6-453P-201ENST00000516819 85 ntBASIC3.82□□□□□ -1.8
CCDC39Q9UFE4 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC39Q9UFE4 AC090132.2-201ENST00000615881 347 ntBASIC3.82□□□□□ -1.8
CCDC39Q9UFE4 AC013791.1-201ENST00000616619 62 ntBASIC3.82□□□□□ -1.8
CCDC39Q9UFE4 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC39Q9UFE4 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
CCDC39Q9UFE4 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC39Q9UFE4 RNU4-35P-201ENST00000362588 141 ntBASIC3.81□□□□□ -1.8
CCDC39Q9UFE4 RNU5F-3P-201ENST00000363767 117 ntBASIC3.81□□□□□ -1.8
CCDC39Q9UFE4 RNU6-1180P-201ENST00000364935 107 ntBASIC3.81□□□□□ -1.8
CCDC39Q9UFE4 RNU6-407P-201ENST00000365280 104 ntBASIC3.81□□□□□ -1.8
CCDC39Q9UFE4 Z98749.2-208ENST00000381646 500 ntBASIC3.81□□□□□ -1.8
CCDC39Q9UFE4 SNORA8.3-201ENST00000384679 139 ntBASIC3.81□□□□□ -1.8
CCDC39Q9UFE4 SNORA26.5-201ENST00000391215 123 ntBASIC3.81□□□□□ -1.8
CCDC39Q9UFE4 RPS29P4-201ENST00000414733 161 ntBASIC3.81□□□□□ -1.8
CCDC39Q9UFE4 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
CCDC39Q9UFE4 AP000705.1-201ENST00000454567 350 ntBASIC3.81□□□□□ -1.8
CCDC39Q9UFE4 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC39Q9UFE4 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC39Q9UFE4 RNU6-1007P-201ENST00000516586 107 ntBASIC3.81□□□□□ -1.8
CCDC39Q9UFE4 HSPE1P4-201ENST00000550617 308 ntBASIC3.81□□□□□ -1.8
CCDC39Q9UFE4 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC39Q9UFE4 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC39Q9UFE4 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC39Q9UFE4 AC099654.7-201ENST00000635788 2127 ntBASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 RNY1P11-201ENST00000363759 113 ntBASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 Y_RNA.293-201ENST00000364908 93 ntBASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 MIR591-201ENST00000385290 95 ntBASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 PTMAP2-201ENST00000397627 327 ntBASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 AL512633.1-201ENST00000399931 655 ntBASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 BPY2DP-201ENST00000422208 265 ntBASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 NDUFB4P6-201ENST00000436819 366 ntBASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 HMGN2P20-201ENST00000437531 273 ntBASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 AL135790.2-201ENST00000437701 267 ntBASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 AC007969.2-201ENST00000441891 191 ntBASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 AC016632.1-201ENST00000503994 196 ntBASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 RNU6-436P-201ENST00000516171 114 ntBASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 IGKV2-26-201ENST00000518305 343 ntBASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 MIR3646-201ENST00000578301 84 ntBASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 MIR5582-201ENST00000579697 68 ntBASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 MIR4506-201ENST00000584693 77 ntBASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 AL391813.1-201ENST00000603098 260 ntBASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 MIR6076-201ENST00000617521 113 ntBASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 MESTIT1_1.1-201ENST00000618871 140 ntBASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 AC134026.1-201ENST00000623249 2239 ntBASIC3.8□□□□□ -1.8
CCDC39Q9UFE4 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 RNU6-1285P-201ENST00000363480 105 ntBASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 SNORA51.4-201ENST00000364993 124 ntBASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 SNORA1.3-201ENST00000384676 136 ntBASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 MIR200C-201ENST00000384980 68 ntBASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 MIR518D-201ENST00000385014 87 ntBASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 MIR134-201ENST00000385258 73 ntBASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 RPL26P27-201ENST00000414397 437 ntBASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 AL158823.1-201ENST00000418441 478 ntBASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 AC009237.8-201ENST00000445492 379 ntBASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 RNU6-1183P-201ENST00000517054 60 ntBASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 RNA5SP291-201ENST00000517222 105 ntBASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 AC136628.3-201ENST00000521868 290 ntBASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 NACAP3-201ENST00000552100 481 ntBASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC39Q9UFE4 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 261.7 ms