Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 RNU6-942P-201ENST00000363002 107 ntBASIC4.54□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 SNORA25.7-201ENST00000364375 127 ntBASIC4.54□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 RNU4-10P-201ENST00000364383 140 ntBASIC4.54□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 RNU6-915P-201ENST00000364943 103 ntBASIC4.54□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 RNU6-245P-201ENST00000384020 107 ntBASIC4.54□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 SNORA26.5-201ENST00000391215 123 ntBASIC4.54□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AL355497.1-201ENST00000406262 551 ntBASIC4.54□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 U3.40-201ENST00000408706 208 ntBASIC4.54□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 SNRPEP9-201ENST00000436794 238 ntBASIC4.54□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 SNRPGP7-201ENST00000469016 106 ntBASIC4.54□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC4.54□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 SCARNA8-201ENST00000515924 131 ntBASIC4.54□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 SNORD116-26-201ENST00000516006 96 ntBASIC4.54□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 RNU6-453P-201ENST00000516819 85 ntBASIC4.54□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 CYCSP39-201ENST00000565821 309 ntBASIC4.54□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 Y_RNA.757-201ENST00000578934 114 ntBASIC4.54□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 MIR5688-201ENST00000580619 83 ntBASIC4.54□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AC019159.1-201ENST00000605094 187 ntBASIC4.54□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.54□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AL592437.2-201ENST00000421655 2434 ntBASIC4.53□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AC092268.1-201ENST00000342691 405 ntBASIC4.53□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 MIR423-201ENST00000362201 94 ntBASIC4.53□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 Y_RNA.393-201ENST00000383936 102 ntBASIC4.53□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 Y_RNA.521-201ENST00000384560 114 ntBASIC4.53□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 RNU6-768P-201ENST00000384683 107 ntBASIC4.53□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 MIR888-201ENST00000401186 77 ntBASIC4.53□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AC096649.2-201ENST00000416186 393 ntBASIC4.53□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC4.53□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 KRTAP19-11P-201ENST00000439851 104 ntBASIC4.53□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 HSPE1P13-201ENST00000451143 297 ntBASIC4.53□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 snoU13.6-201ENST00000458785 104 ntBASIC4.53□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC4.53□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC4.52□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC4.52□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC4.52□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RNU1-70P-201ENST00000362618 164 ntBASIC4.52□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 SNORD56.1-201ENST00000362913 68 ntBASIC4.52□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 SNORA44-201ENST00000384584 132 ntBASIC4.52□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 MIR184-201ENST00000384962 84 ntBASIC4.52□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 MIR526A2-201ENST00000390198 65 ntBASIC4.52□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 SNORA75.5-201ENST00000391291 81 ntBASIC4.52□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RPL27AP8-201ENST00000424277 446 ntBASIC4.52□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC078809.1-201ENST00000427601 140 ntBASIC4.52□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC006028.1-201ENST00000438379 402 ntBASIC4.52□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC007969.2-201ENST00000441891 191 ntBASIC4.52□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC245047.8-201ENST00000456455 284 ntBASIC4.52□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC4.52□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC4.52□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RNU6-1183P-201ENST00000517054 60 ntBASIC4.52□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AL161713.1-201ENST00000555538 145 ntBASIC4.52□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC244205.2-202ENST00000635781 342 ntBASIC4.52□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC4.51□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RNU6-1285P-201ENST00000363480 105 ntBASIC4.51□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 Y_RNA.251-201ENST00000364551 99 ntBASIC4.51□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 U8.7-201ENST00000364940 136 ntBASIC4.51□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RNU6-969P-201ENST00000383900 105 ntBASIC4.51□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 SNORA72.4-201ENST00000384174 132 ntBASIC4.51□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 SNORA36A-201ENST00000384221 132 ntBASIC4.51□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RNU6-588P-201ENST00000410281 105 ntBASIC4.51□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RNU6-710P-201ENST00000410424 105 ntBASIC4.51□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC006989.1-201ENST00000427212 131 ntBASIC4.51□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC4.51□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RPL23AP14-201ENST00000468281 468 ntBASIC4.51□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC091179.3-201ENST00000474761 144 ntBASIC4.51□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RNU6-772P-201ENST00000516042 105 ntBASIC4.51□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RNU2-12P-201ENST00000517216 168 ntBASIC4.51□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 TRAV28-201ENST00000557548 323 ntBASIC4.51□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 MIR3121-201ENST00000579680 77 ntBASIC4.51□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.51□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.5□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RNU6-235P-201ENST00000362644 107 ntBASIC4.5□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RNU6-728P-201ENST00000365375 104 ntBASIC4.5□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 MIR544A-201ENST00000384855 91 ntBASIC4.5□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC4.5□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 YPEL5P1-201ENST00000419731 367 ntBASIC4.5□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 MTCO1P44-201ENST00000441935 243 ntBASIC4.5□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 HMGB3P8-201ENST00000449709 577 ntBASIC4.5□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RN7SL594P-201ENST00000470590 287 ntBASIC4.5□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RPL23AP70-201ENST00000483361 460 ntBASIC4.5□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 RNA5SP356-201ENST00000515972 94 ntBASIC4.5□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC011602.1-201ENST00000546484 331 ntBASIC4.5□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AL356575.1-201ENST00000603008 283 ntBASIC4.5□□□□□ -1.69
SENP3-EIF4A1A0A087X0R7 AC108081.1-201ENST00000604358 221 ntBASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 189.5 ms