Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 Y_RNA.101-201ENST00000363154 102 ntBASIC4.68□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 RNU6-147P-201ENST00000383983 107 ntBASIC4.68□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 RNU6-1310P-201ENST00000384153 107 ntBASIC4.68□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 Z85995.1-201ENST00000415547 335 ntBASIC4.68□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 RPS12P23-201ENST00000419579 400 ntBASIC4.68□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 RNU6-589P-201ENST00000516485 107 ntBASIC4.68□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 SNORA43.2-201ENST00000516652 128 ntBASIC4.68□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AP001328.1-201ENST00000528550 176 ntBASIC4.68□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AC018448.1-201ENST00000552843 316 ntBASIC4.68□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AC024153.1-201ENST00000603103 365 ntBASIC4.68□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 U7.2-201ENST00000607576 63 ntBASIC4.68□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AL078604.3-201ENST00000615580 211 ntBASIC4.68□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.68□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 DEFB108F-201ENST00000344638 222 ntBASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 RNU6ATAC19P-201ENST00000408096 110 ntBASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AC138623.1-201ENST00000418060 216 ntBASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AC243964.1-201ENST00000441814 261 ntBASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 RPL27AP5-201ENST00000469428 449 ntBASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AC091874.1-201ENST00000511402 339 ntBASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 Y_RNA.694-201ENST00000516677 117 ntBASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 RNA5SP54-201ENST00000516951 92 ntBASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 Y_RNA.712-201ENST00000517011 92 ntBASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AC021269.2-201ENST00000532318 330 ntBASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AC109810.1-201ENST00000534066 224 ntBASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 ZNF192P1-203ENST00000565888 810 ntBASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AC004467.1-201ENST00000615678 330 ntBASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AC024581.2-201ENST00000619986 252 ntBASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AL137790.1-201ENST00000634283 177 ntBASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 PSMD5-AS1-215ENST00000640622 205 ntBASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.67□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 Y_RNA.498-201ENST00000384460 102 ntBASIC4.66□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 RNU6-763P-201ENST00000390865 106 ntBASIC4.66□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 U3.37-201ENST00000408528 213 ntBASIC4.66□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 RNU2-54P-201ENST00000410299 190 ntBASIC4.66□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 RNA5SP89-201ENST00000410300 108 ntBASIC4.66□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 ATP5A1P2-201ENST00000412323 255 ntBASIC4.66□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 RPL23AP95-201ENST00000426806 265 ntBASIC4.66□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 U3.44-201ENST00000458938 192 ntBASIC4.66□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 RNU7-107P-201ENST00000459121 61 ntBASIC4.66□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 RN7SL504P-201ENST00000494496 287 ntBASIC4.66□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 PHBP14-201ENST00000512887 367 ntBASIC4.66□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 RNU6-168P-201ENST00000516189 101 ntBASIC4.66□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 RNA5SP164-201ENST00000516533 110 ntBASIC4.66□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 MIR2276-201ENST00000516886 89 ntBASIC4.66□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AP004607.1-201ENST00000524456 203 ntBASIC4.66□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 NACAP3-201ENST00000552100 481 ntBASIC4.66□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC4.66□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AC091932.3-201ENST00000624223 323 ntBASIC4.66□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.66□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.66□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC4.66□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.65□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 CUL1P1-201ENST00000509510 2425 ntBASIC4.65□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 AC068647.1-201ENST00000489539 2265 ntBASIC4.65□□□□□ -1.66
SENP3-EIF4A1A0A087X0R7 MIR30E-201ENST00000362104 92 ntBASIC4.65□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 RNU4-35P-201ENST00000362588 141 ntBASIC4.65□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 RNU2-68P-201ENST00000410878 191 ntBASIC4.65□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 RNU6-1199P-201ENST00000411249 104 ntBASIC4.65□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 CKS1BP5-201ENST00000434172 273 ntBASIC4.65□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC4.65□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC4.65□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 RNU2-56P-201ENST00000516826 190 ntBASIC4.65□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AC090281.1-201ENST00000523019 276 ntBASIC4.65□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AC026333.2-201ENST00000542164 106 ntBASIC4.65□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC4.65□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 MIR3646-201ENST00000578301 84 ntBASIC4.65□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.65□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.65□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC4.65□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AK9-203ENST00000368948 2478 ntTSL 5 BASIC4.65□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 RNU6-873P-201ENST00000363833 107 ntBASIC4.64□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 SNORA8.3-201ENST00000384679 139 ntBASIC4.64□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AC006461.1-201ENST00000412637 326 ntBASIC4.64□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AC112220.1-201ENST00000434628 355 ntBASIC4.64□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 MTND5P34-201ENST00000568888 325 ntBASIC4.64□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 MIR5571-201ENST00000577998 113 ntBASIC4.64□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AC023043.3-201ENST00000593113 385 ntBASIC4.64□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 AL591926.4-201ENST00000616895 298 ntBASIC4.64□□□□□ -1.67
SENP3-EIF4A1A0A087X0R7 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 191.1 ms