Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RNU6-1097P-201ENST00000363586 107 ntBASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 RNU4-56P-201ENST00000364700 142 ntBASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 SNORA20.2-201ENST00000383922 131 ntBASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 RNU6-142P-201ENST00000384019 107 ntBASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 Y_RNA.560-201ENST00000384689 102 ntBASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 Y_RNA.576-201ENST00000384781 102 ntBASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 MIR578-201ENST00000384828 96 ntBASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 AL357139.1-201ENST00000407792 426 ntBASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 RNU6-293P-201ENST00000411259 106 ntBASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 AC010099.3-201ENST00000423896 409 ntBASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 AC022447.4-201ENST00000504053 364 ntBASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 MTND3P25-201ENST00000509243 135 ntBASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 AC067942.3-201ENST00000512025 362 ntBASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 AP001893.2-201ENST00000526949 202 ntBASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 AC025678.1-201ENST00000567861 338 ntBASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 MIR3136-201ENST00000583498 78 ntBASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 AC090616.2-202ENST00000584248 222 ntBASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 AC005786.1-201ENST00000588553 154 ntBASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 AC078795.2-201ENST00000602835 1252 ntBASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 AC019226.2-201ENST00000625973 424 ntBASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 U4.7-201ENST00000638126 106 ntBASIC1.07□□□□□ -2.24
SHANK3Q9BYB0 SNORD56.1-201ENST00000362913 68 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 RNU6-190P-201ENST00000384154 102 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 RNU6-39P-201ENST00000384344 107 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 AL031779.1-201ENST00000415663 330 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 AC243964.1-201ENST00000441814 261 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 GAPDHP17-201ENST00000449858 1001 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 RPS20P10-201ENST00000451209 253 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 AC116562.3-201ENST00000506136 177 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 RNU6-123P-201ENST00000516163 102 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 AC068587.5-201ENST00000528506 175 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 AC067863.3-201ENST00000624172 122 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 RNU6-26P-201ENST00000383985 107 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 RNU6-360P-201ENST00000390944 104 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 BTF3L4P2-201ENST00000392798 346 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 HIGD1AP15-201ENST00000416198 280 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 USP9YP12-201ENST00000450481 570 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 AC105417.1-201ENST00000514691 285 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 RNU1-86P-201ENST00000516108 154 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 RNU1-107P-201ENST00000516617 154 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 RNU6-410P-201ENST00000517006 107 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 APOOP3-201ENST00000536787 586 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 AC234772.3-201ENST00000602277 528 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 AP000654.2-201ENST00000605633 586 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 Z69720.2-201ENST00000624755 279 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 AL157786.1-207ENST00000627771 695 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 U6.114-201ENST00000636407 96 ntBASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.06□□□□□ -2.24
SHANK3Q9BYB0 ZNF680P1-201ENST00000436625 1469 ntBASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 RNU6-212P-201ENST00000362642 104 ntBASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 RNU6-1287P-201ENST00000362914 107 ntBASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 SNORD114-2-201ENST00000363953 78 ntBASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 RNU6-1141P-201ENST00000364520 107 ntBASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 RNU6-116P-201ENST00000384042 109 ntBASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 RNU6-1060P-201ENST00000384664 107 ntBASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 MIR1-2-201ENST00000384961 85 ntBASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 PIGFP2-201ENST00000421400 651 ntBASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 CST2P1-201ENST00000425770 87 ntBASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 GPR143P-201ENST00000434155 205 ntBASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 AL360271.2-201ENST00000447710 161 ntBASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 AC079448.1-201ENST00000449377 373 ntBASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 MTCO3P7-201ENST00000510008 774 ntBASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 FAM206BP-201ENST00000510179 541 ntBASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 AC008834.1-201ENST00000511612 175 ntBASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 RNU6-377P-201ENST00000515965 102 ntBASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 RNU6-965P-201ENST00000516721 96 ntBASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 RNU6-685P-201ENST00000517088 95 ntBASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 BNIP3P39-201ENST00000601077 554 ntBASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 AC011458.1-201ENST00000604034 617 ntBASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 Z82243.1-201ENST00000609432 473 ntBASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 AC004908.3-201ENST00000610248 625 ntBASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.05□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 166.8 ms