Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 MIR544A-201ENST00000384855 91 ntBASIC1.42□□□□□ -2.18
SCN4AP35499 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
SCN4AP35499 PMCHL2-203ENST00000457791 237 ntBASIC1.42□□□□□ -2.18
SCN4AP35499 RPL31P58-201ENST00000469001 379 ntBASIC1.42□□□□□ -2.18
SCN4AP35499 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC1.42□□□□□ -2.18
SCN4AP35499 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC1.42□□□□□ -2.18
SCN4AP35499 RNU1-86P-201ENST00000516108 154 ntBASIC1.42□□□□□ -2.18
SCN4AP35499 Y_RNA.687-201ENST00000516558 91 ntBASIC1.42□□□□□ -2.18
SCN4AP35499 RNU1-107P-201ENST00000516617 154 ntBASIC1.42□□□□□ -2.18
SCN4AP35499 RNU6-1220P-201ENST00000517126 108 ntBASIC1.42□□□□□ -2.18
SCN4AP35499 AC026407.1-201ENST00000518369 204 ntBASIC1.42□□□□□ -2.18
SCN4AP35499 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.42□□□□□ -2.18
SCN4AP35499 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC1.42□□□□□ -2.18
SCN4AP35499 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC1.42□□□□□ -2.18
SCN4AP35499 MIR4775-201ENST00000581168 75 ntBASIC1.42□□□□□ -2.18
SCN4AP35499 ELOCP5-201ENST00000604924 333 ntBASIC1.42□□□□□ -2.18
SCN4AP35499 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC1.42□□□□□ -2.18
SCN4AP35499 uc_338.15-201ENST00000615470 191 ntBASIC1.42□□□□□ -2.18
SCN4AP35499 AC120349.3-201ENST00000624377 529 ntBASIC1.42□□□□□ -2.18
SCN4AP35499 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.41□□□□□ -2.18
SCN4AP35499 RNU6-82P-201ENST00000363970 107 ntBASIC1.41□□□□□ -2.18
SCN4AP35499 SNORD14B-201ENST00000364533 90 ntBASIC1.41□□□□□ -2.18
SCN4AP35499 Y_RNA.255-201ENST00000364581 97 ntBASIC1.41□□□□□ -2.18
SCN4AP35499 RNU6-384P-201ENST00000364900 104 ntBASIC1.41□□□□□ -2.18
SCN4AP35499 RNU1-148P-201ENST00000384472 162 ntBASIC1.41□□□□□ -2.18
SCN4AP35499 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC1.41□□□□□ -2.18
SCN4AP35499 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC1.41□□□□□ -2.18
SCN4AP35499 VN1R108P-201ENST00000431580 830 ntBASIC1.41□□□□□ -2.18
SCN4AP35499 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC1.41□□□□□ -2.18
SCN4AP35499 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.41□□□□□ -2.18
SCN4AP35499 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.41□□□□□ -2.18
SCN4AP35499 AC016691.1-201ENST00000441321 413 ntBASIC1.41□□□□□ -2.18
SCN4AP35499 RPS27AP8-201ENST00000452665 445 ntBASIC1.41□□□□□ -2.18
SCN4AP35499 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC1.41□□□□□ -2.18
SCN4AP35499 AC093534.1-201ENST00000504977 132 ntBASIC1.41□□□□□ -2.18
SCN4AP35499 AC009646.1-201ENST00000510455 318 ntBASIC1.41□□□□□ -2.18
SCN4AP35499 AC091965.2-201ENST00000512324 613 ntBASIC1.41□□□□□ -2.18
SCN4AP35499 LRRC34P2-201ENST00000514850 553 ntBASIC1.41□□□□□ -2.18
SCN4AP35499 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC1.41□□□□□ -2.18
SCN4AP35499 AP005902.1-201ENST00000521358 186 ntBASIC1.41□□□□□ -2.18
SCN4AP35499 AP002963.1-201ENST00000530590 184 ntBASIC1.41□□□□□ -2.18
SCN4AP35499 AC025449.1-201ENST00000603896 529 ntBASIC1.41□□□□□ -2.18
SCN4AP35499 AC091304.9-201ENST00000612091 226 ntBASIC1.41□□□□□ -2.18
SCN4AP35499 AC005609.4-201ENST00000625071 447 ntBASIC1.41□□□□□ -2.18
SCN4AP35499 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.41□□□□□ -2.18
SCN4AP35499 MIR373-201ENST00000362273 69 ntBASIC1.4□□□□□ -2.18
SCN4AP35499 RNU6-1322P-201ENST00000364309 107 ntBASIC1.4□□□□□ -2.18
SCN4AP35499 RNY1P4-201ENST00000384595 115 ntBASIC1.4□□□□□ -2.18
SCN4AP35499 SNORA40.19-201ENST00000390846 128 ntBASIC1.4□□□□□ -2.18
SCN4AP35499 UBE2V1P10-201ENST00000414685 269 ntBASIC1.4□□□□□ -2.18
SCN4AP35499 OR51A5P-201ENST00000415429 942 ntBASIC1.4□□□□□ -2.18
SCN4AP35499 MTCO2P34-201ENST00000421994 607 ntBASIC1.4□□□□□ -2.18
SCN4AP35499 AC008267.5-201ENST00000424928 265 ntBASIC1.4□□□□□ -2.18
SCN4AP35499 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC1.4□□□□□ -2.18
SCN4AP35499 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC1.4□□□□□ -2.18
SCN4AP35499 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.4□□□□□ -2.18
SCN4AP35499 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.4□□□□□ -2.18
SCN4AP35499 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.4□□□□□ -2.18
SCN4AP35499 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.4□□□□□ -2.18
SCN4AP35499 MTND3P16-201ENST00000452205 344 ntBASIC1.4□□□□□ -2.18
SCN4AP35499 AC013470.1-201ENST00000453438 462 ntBASIC1.4□□□□□ -2.18
SCN4AP35499 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC1.4□□□□□ -2.18
SCN4AP35499 RNA5SP436-201ENST00000516020 115 ntBASIC1.4□□□□□ -2.18
SCN4AP35499 SNORA25.17-201ENST00000517184 124 ntBASIC1.4□□□□□ -2.18
SCN4AP35499 CYCSP27-201ENST00000527643 293 ntBASIC1.4□□□□□ -2.18
SCN4AP35499 AC068338.1-201ENST00000565567 176 ntBASIC1.4□□□□□ -2.18
SCN4AP35499 AC026271.5-201ENST00000577873 130 ntBASIC1.4□□□□□ -2.18
SCN4AP35499 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC1.4□□□□□ -2.18
SCN4AP35499 VN1R107P-201ENST00000601784 209 ntBASIC1.4□□□□□ -2.18
SCN4AP35499 AC006566.1-201ENST00000608943 513 ntBASIC1.4□□□□□ -2.18
SCN4AP35499 USP12-203ENST00000620323 349 ntTSL 3 BASIC1.4□□□□□ -2.18
SCN4AP35499 AC091932.3-201ENST00000624223 323 ntBASIC1.4□□□□□ -2.18
SCN4AP35499 MIR6863-201ENST00000636112 90 ntBASIC1.4□□□□□ -2.18
SCN4AP35499 RNU6-1285P-201ENST00000363480 105 ntBASIC1.4□□□□□ -2.19
SCN4AP35499 Y_RNA.194-201ENST00000363985 102 ntBASIC1.4□□□□□ -2.19
SCN4AP35499 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC1.4□□□□□ -2.19
SCN4AP35499 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.4□□□□□ -2.19
SCN4AP35499 AL121601.2-201ENST00000438019 707 ntBASIC1.4□□□□□ -2.19
SCN4AP35499 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.4□□□□□ -2.19
SCN4AP35499 snoU13.14-201ENST00000459372 104 ntBASIC1.4□□□□□ -2.19
SCN4AP35499 GMFBP1-201ENST00000467831 427 ntBASIC1.4□□□□□ -2.19
SCN4AP35499 MTCO3P38-201ENST00000468910 766 ntBASIC1.4□□□□□ -2.19
SCN4AP35499 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC1.4□□□□□ -2.19
SCN4AP35499 AP002453.2-201ENST00000533503 320 ntBASIC1.4□□□□□ -2.19
SCN4AP35499 AC022880.1-201ENST00000534017 973 ntBASIC1.4□□□□□ -2.19
SCN4AP35499 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.4□□□□□ -2.19
SCN4AP35499 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.4□□□□□ -2.19
SCN4AP35499 AC073544.2-201ENST00000601155 540 ntBASIC1.4□□□□□ -2.19
SCN4AP35499 AL138963.2-201ENST00000605137 226 ntBASIC1.4□□□□□ -2.19
SCN4AP35499 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.4□□□□□ -2.19
SCN4AP35499 RNU6-1120P-201ENST00000362988 108 ntBASIC1.39□□□□□ -2.19
SCN4AP35499 SNORA3A-201ENST00000364113 130 ntBASIC1.39□□□□□ -2.19
SCN4AP35499 RNU6-43P-201ENST00000384302 107 ntBASIC1.39□□□□□ -2.19
SCN4AP35499 Y_RNA.481-201ENST00000384373 102 ntBASIC1.39□□□□□ -2.19
SCN4AP35499 RNU6-393P-201ENST00000384475 107 ntBASIC1.39□□□□□ -2.19
SCN4AP35499 RNU6-1222P-201ENST00000384615 107 ntBASIC1.39□□□□□ -2.19
SCN4AP35499 MIR578-201ENST00000384828 96 ntBASIC1.39□□□□□ -2.19
SCN4AP35499 MIR147B-201ENST00000390185 80 ntBASIC1.39□□□□□ -2.19
SCN4AP35499 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC1.39□□□□□ -2.19
SCN4AP35499 AC092809.3-201ENST00000415453 231 ntBASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 180.7 ms