Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 Y_RNA.778-201ENST00000620203 90 ntBASIC4.18□□□□□ -1.74
CCDC39Q9UFE4 AL360181.4-201ENST00000621752 134 ntBASIC4.18□□□□□ -1.74
CCDC39Q9UFE4 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
CCDC39Q9UFE4 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
CCDC39Q9UFE4 AC010332.2-201ENST00000613083 1904 ntBASIC4.18□□□□□ -1.74
CCDC39Q9UFE4 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC39Q9UFE4 AC116096.1-201ENST00000566804 2314 ntBASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 Y_RNA.71-201ENST00000362892 104 ntBASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 RNU6-151P-201ENST00000364158 107 ntBASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 RNU4-84P-201ENST00000364200 139 ntBASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 SNORD14B-201ENST00000364533 90 ntBASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 RNU6-17P-201ENST00000384245 107 ntBASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 RNU6-843P-201ENST00000384454 104 ntBASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 RNU6-18P-201ENST00000384527 107 ntBASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 HSPE1P26-201ENST00000405341 275 ntBASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 SNORD12B-201ENST00000410433 91 ntBASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 AL158156.1-201ENST00000422509 473 ntBASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 AC091390.1-201ENST00000433904 331 ntBASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 NDUFB1P1-201ENST00000435191 180 ntBASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 RPS4XP2-201ENST00000458402 793 ntBASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 RPL26P26-201ENST00000480251 434 ntBASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 AC097462.2-201ENST00000504623 481 ntBASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 RNU6-971P-201ENST00000516920 106 ntBASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 RN7SL703P-201ENST00000578485 302 ntBASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 MIR5685-201ENST00000579080 79 ntBASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 MIR3684-201ENST00000579779 74 ntBASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 MIR4697-201ENST00000582977 78 ntBASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 MIR6810-201ENST00000622701 70 ntBASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 AC068724.3-201ENST00000625906 87 ntBASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC39Q9UFE4 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 MFSD8-236ENST00000641509 4050 ntBASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 Y_RNA.217-201ENST00000364214 105 ntBASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 RNU4-56P-201ENST00000364700 142 ntBASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 Y_RNA.570-201ENST00000384750 101 ntBASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 SNORA40-201ENST00000388090 126 ntBASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 EI24P2-201ENST00000397776 1076 ntBASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 AL357075.1-201ENST00000404107 726 ntBASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 RNU2-52P-201ENST00000410680 190 ntBASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 AL139247.1-201ENST00000422768 325 ntBASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 AP000907.1-201ENST00000428428 510 ntBASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 RPS29P7-201ENST00000439662 171 ntBASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 AC009296.1-201ENST00000443146 155 ntBASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 IFNA11P-201ENST00000446352 526 ntBASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 AC009237.7-201ENST00000447357 229 ntBASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 Y_RNA.641-201ENST00000459414 105 ntBASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 RPL23AP62-201ENST00000463396 453 ntBASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 AC117440.1-201ENST00000474107 571 ntBASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 HMGB3P3-201ENST00000510526 400 ntBASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 RN7SKP289-201ENST00000517244 295 ntBASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 AC084851.1-201ENST00000529105 249 ntBASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 AC087499.8-201ENST00000578406 226 ntBASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 MIR5187-201ENST00000583479 76 ntBASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 AL133393.1-201ENST00000603277 287 ntBASIC4.16□□□□□ -1.74
CCDC39Q9UFE4 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
CCDC39Q9UFE4 RNA5SP361-201ENST00000362686 118 ntBASIC4.15□□□□□ -1.75
CCDC39Q9UFE4 RNU5A-1-201ENST00000362698 116 ntBASIC4.15□□□□□ -1.75
CCDC39Q9UFE4 RNU6-805P-201ENST00000365643 106 ntBASIC4.15□□□□□ -1.75
CCDC39Q9UFE4 SNORD116-14-201ENST00000383894 92 ntBASIC4.15□□□□□ -1.75
CCDC39Q9UFE4 SNORD116-17-201ENST00000383929 92 ntBASIC4.15□□□□□ -1.75
CCDC39Q9UFE4 SNORD116-15-201ENST00000384445 92 ntBASIC4.15□□□□□ -1.75
CCDC39Q9UFE4 SNORD116-20-201ENST00000384529 92 ntBASIC4.15□□□□□ -1.75
CCDC39Q9UFE4 SNORD116-19-201ENST00000384729 92 ntBASIC4.15□□□□□ -1.75
CCDC39Q9UFE4 RN7SKP156-201ENST00000410308 342 ntBASIC4.15□□□□□ -1.75
CCDC39Q9UFE4 SEPT7P4-201ENST00000437076 306 ntBASIC4.15□□□□□ -1.75
CCDC39Q9UFE4 POLR2KP2-201ENST00000438155 177 ntBASIC4.15□□□□□ -1.75
CCDC39Q9UFE4 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC4.15□□□□□ -1.75
CCDC39Q9UFE4 AL137159.1-201ENST00000452808 512 ntBASIC4.15□□□□□ -1.75
CCDC39Q9UFE4 AC087588.1-201ENST00000462203 316 ntBASIC4.15□□□□□ -1.75
CCDC39Q9UFE4 AL133162.1-201ENST00000463228 453 ntBASIC4.15□□□□□ -1.75
CCDC39Q9UFE4 RN7SL330P-201ENST00000469709 307 ntBASIC4.15□□□□□ -1.75
CCDC39Q9UFE4 AC005840.1-201ENST00000498412 377 ntBASIC4.15□□□□□ -1.75
CCDC39Q9UFE4 HSPE1P5-201ENST00000561489 272 ntBASIC4.15□□□□□ -1.75
CCDC39Q9UFE4 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC4.15□□□□□ -1.75
CCDC39Q9UFE4 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.15□□□□□ -1.75
CCDC39Q9UFE4 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC4.15□□□□□ -1.75
CCDC39Q9UFE4 AC107294.1-201ENST00000609524 467 ntBASIC4.15□□□□□ -1.75
CCDC39Q9UFE4 AP000553.6-201ENST00000641242 118 ntBASIC4.15□□□□□ -1.75
CCDC39Q9UFE4 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC39Q9UFE4 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 AL133383.2-201ENST00000622958 2336 ntBASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 RNU6-50P-201ENST00000362356 103 ntBASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 Y_RNA.23-201ENST00000362496 106 ntBASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 RNU6-626P-201ENST00000363354 107 ntBASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 RNU6-173P-201ENST00000364215 104 ntBASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 RNA5SP42-201ENST00000364278 115 ntBASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 187.5 ms