Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 MTND5P2-201ENST00000442927 1142 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 snoU13.14-201ENST00000459372 104 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 HMGB1P30-201ENST00000492455 606 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 AC117522.1-201ENST00000509821 380 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 RNU6-970P-201ENST00000516312 107 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 RNU6-586P-201ENST00000517265 104 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 MTND2P32-201ENST00000521584 1038 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 AC107953.1-201ENST00000522216 297 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 AL160236.1-201ENST00000556317 195 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 MIR4711-201ENST00000578274 70 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 AP000811.1-201ENST00000603803 651 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 AC103810.9-201ENST00000606688 112 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 AL139286.2-201ENST00000606838 396 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 AC092106.3-201ENST00000611308 722 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 AL159153.1-201ENST00000619688 317 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 AC091304.6-201ENST00000619761 202 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 AC022960.3-201ENST00000619794 441 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 USP12-203ENST00000620323 349 ntTSL 3 BASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 SCARNA4-202ENST00000625402 129 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 AC106754.1-201ENST00000562632 1513 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 RNU6-387P-201ENST00000411331 105 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 VN1R36P-201ENST00000414936 291 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 AL008987.1-201ENST00000415528 237 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 AL158823.1-201ENST00000418441 478 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 SDAD1P3-201ENST00000427380 333 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 AC016597.2-201ENST00000613256 341 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 MIR7844-201ENST00000616161 122 ntBASIC1.2□□□□□ -2.22
SHANK3Q9BYB0 AC091812.1-201ENST00000432235 1948 ntBASIC1.19□□□□□ -2.22
SHANK3Q9BYB0 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.19□□□□□ -2.22
SHANK3Q9BYB0 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.19□□□□□ -2.22
SHANK3Q9BYB0 RNY1P12-201ENST00000364251 105 ntBASIC1.19□□□□□ -2.22
SHANK3Q9BYB0 RNU6-546P-201ENST00000383991 107 ntBASIC1.19□□□□□ -2.22
SHANK3Q9BYB0 MIR558-201ENST00000384920 94 ntBASIC1.19□□□□□ -2.22
SHANK3Q9BYB0 RNU2-36P-201ENST00000410361 191 ntBASIC1.19□□□□□ -2.22
SHANK3Q9BYB0 Y_RNA.598-201ENST00000410480 95 ntBASIC1.19□□□□□ -2.22
SHANK3Q9BYB0 Z99497.1-201ENST00000421282 135 ntBASIC1.19□□□□□ -2.22
SHANK3Q9BYB0 MTCYBP5-201ENST00000423752 1135 ntBASIC1.19□□□□□ -2.22
SHANK3Q9BYB0 AC008267.5-201ENST00000424928 265 ntBASIC1.19□□□□□ -2.22
SHANK3Q9BYB0 AL606517.1-201ENST00000446914 387 ntBASIC1.19□□□□□ -2.22
SHANK3Q9BYB0 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.19□□□□□ -2.22
SHANK3Q9BYB0 RNU6-333P-201ENST00000459117 107 ntBASIC1.19□□□□□ -2.22
SHANK3Q9BYB0 AP000797.1-201ENST00000478870 387 ntBASIC1.19□□□□□ -2.22
SHANK3Q9BYB0 SNORA3.4-201ENST00000515969 96 ntBASIC1.19□□□□□ -2.22
SHANK3Q9BYB0 RNU2-53P-201ENST00000516257 147 ntBASIC1.19□□□□□ -2.22
SHANK3Q9BYB0 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC1.19□□□□□ -2.22
SHANK3Q9BYB0 AC022616.8-201ENST00000533569 253 ntBASIC1.19□□□□□ -2.22
SHANK3Q9BYB0 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC1.19□□□□□ -2.22
SHANK3Q9BYB0 AL773524.1-201ENST00000614065 229 ntBASIC1.19□□□□□ -2.22
SHANK3Q9BYB0 AC126177.8-201ENST00000618339 1015 ntBASIC1.19□□□□□ -2.22
SHANK3Q9BYB0 uc_338.11-201ENST00000619132 160 ntBASIC1.19□□□□□ -2.22
SHANK3Q9BYB0 AL078595.3-201ENST00000623815 1166 ntBASIC1.19□□□□□ -2.22
SHANK3Q9BYB0 SNORD56.2-201ENST00000363242 71 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 RNU4-1-201ENST00000363925 141 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 RNU6-371P-201ENST00000364283 108 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 RNU6-72P-201ENST00000384285 79 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 CBX3P9-201ENST00000402326 552 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 RNA5SP111-201ENST00000411386 101 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 UBE2V1P10-201ENST00000414685 269 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 CALM2P2-201ENST00000428512 440 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 AL365184.2-201ENST00000431139 435 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 RPL23AP6-201ENST00000446637 472 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 AL590365.1-201ENST00000450788 243 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 AC006026.2-201ENST00000457376 180 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 AC087884.1-201ENST00000469738 328 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 AC022616.6-201ENST00000520479 119 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 TRAV32-201ENST00000553993 340 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 AC008269.2-201ENST00000561915 1105 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 MIR5697-201ENST00000578045 78 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 AC108747.1-201ENST00000609508 535 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 AL359314.1-201ENST00000616913 261 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 RNA5SP331-201ENST00000364986 107 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 MIR29B2-201ENST00000385055 81 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 AL591034.2-201ENST00000402839 359 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 AC114491.1-201ENST00000416095 246 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 AP001025.1-201ENST00000486139 332 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 HMGB1P35-201ENST00000503360 598 ntBASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC1.18□□□□□ -2.22
SHANK3Q9BYB0 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC1.18□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 304.9 ms