Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 DPPA3P3-201ENST00000603842 430 ntBASIC1.48□□□□□ -2.17
SCN4AP35499 AL158063.1-201ENST00000615349 536 ntBASIC1.48□□□□□ -2.17
SCN4AP35499 SEPT14P19-203ENST00000633205 211 ntBASIC1.48□□□□□ -2.17
SCN4AP35499 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
SCN4AP35499 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
SCN4AP35499 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
SCN4AP35499 RNU6-37P-201ENST00000362692 107 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 RNU6-11P-201ENST00000364234 107 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 RNU5E-7P-201ENST00000365290 117 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 SNORA18.2-201ENST00000383865 132 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 RNU6-25P-201ENST00000383873 107 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 RNU6-48P-201ENST00000384161 107 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 RNU6-16P-201ENST00000384385 107 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 RNU6-15P-201ENST00000384534 107 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 RNU6-29P-201ENST00000384637 107 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 RNU2-49P-201ENST00000410666 184 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC1.47□□□□□ -2.17
SCN4AP35499 OR6C66P-201ENST00000414917 930 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 CDK8P2-201ENST00000415020 547 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 AC138623.1-201ENST00000418060 216 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 AL591212.2-201ENST00000433923 257 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 USP9YP12-201ENST00000450481 570 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 AL121769.1-201ENST00000469473 401 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 RAP1BP2-201ENST00000478270 544 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC1.47□□□□□ -2.17
SCN4AP35499 AC116655.1-201ENST00000508324 901 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 AC023141.11-201ENST00000508864 202 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 AC112206.3-201ENST00000514578 389 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 RNA5SP112-201ENST00000515937 99 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 MIR892C-201ENST00000516410 77 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.47□□□□□ -2.17
SCN4AP35499 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC1.47□□□□□ -2.17
SCN4AP35499 AC064872.1-201ENST00000604823 1072 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 Z99289.3-201ENST00000605586 594 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 MIR6134-201ENST00000617606 109 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.47□□□□□ -2.17
SCN4AP35499 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
SCN4AP35499 RNU4-42P-201ENST00000364738 142 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 Y_RNA.295-201ENST00000364918 102 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 RNU6-456P-201ENST00000384493 107 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC1.47□□□□□ -2.17
SCN4AP35499 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC1.47□□□□□ -2.17
SCN4AP35499 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC1.47□□□□□ -2.17
SCN4AP35499 AIMP1P2-201ENST00000425294 312 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 MTND2P4-201ENST00000445034 1004 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 AC003071.1-201ENST00000451219 789 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC1.47□□□□□ -2.17
SCN4AP35499 RNU7-182P-201ENST00000459009 62 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC1.47□□□□□ -2.17
SCN4AP35499 AC006512.1-201ENST00000468816 291 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 AP001025.1-201ENST00000486139 332 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 AC079382.1-201ENST00000493346 557 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 AC098591.2-201ENST00000510152 315 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 ACA59.2-201ENST00000517061 156 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC1.47□□□□□ -2.17
SCN4AP35499 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC1.47□□□□□ -2.17
SCN4AP35499 AL356432.3-201ENST00000568952 465 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 AC007363.1-201ENST00000604736 620 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 AC096772.1-201ENST00000609146 564 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 HMGB1P24-202ENST00000615653 685 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 SDR42E1P4-201ENST00000620894 481 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 AC068792.1-201ENST00000621354 417 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 MIR3974-201ENST00000637126 96 ntBASIC1.47□□□□□ -2.17
SCN4AP35499 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
SCN4AP35499 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC1.46□□□□□ -2.18
SCN4AP35499 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
SCN4AP35499 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
SCN4AP35499 RNU6-553P-201ENST00000364047 96 ntBASIC1.46□□□□□ -2.18
SCN4AP35499 SNORA24.1-201ENST00000384401 135 ntBASIC1.46□□□□□ -2.18
SCN4AP35499 RNU6-1179P-201ENST00000384667 107 ntBASIC1.46□□□□□ -2.18
SCN4AP35499 RNU6-903P-201ENST00000391270 109 ntBASIC1.46□□□□□ -2.18
SCN4AP35499 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.46□□□□□ -2.18
SCN4AP35499 RNU6-607P-201ENST00000411283 108 ntBASIC1.46□□□□□ -2.18
SCN4AP35499 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC1.46□□□□□ -2.18
SCN4AP35499 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC1.46□□□□□ -2.18
SCN4AP35499 MTATP6P16-201ENST00000434543 526 ntBASIC1.46□□□□□ -2.18
SCN4AP35499 AC104850.1-201ENST00000435940 476 ntBASIC1.46□□□□□ -2.18
SCN4AP35499 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC1.46□□□□□ -2.18
SCN4AP35499 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC1.46□□□□□ -2.18
SCN4AP35499 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.46□□□□□ -2.18
SCN4AP35499 MTND1P27-201ENST00000451117 902 ntBASIC1.46□□□□□ -2.18
SCN4AP35499 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.46□□□□□ -2.18
SCN4AP35499 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC1.46□□□□□ -2.18
SCN4AP35499 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC1.46□□□□□ -2.18
SCN4AP35499 Y_RNA.688-201ENST00000516565 95 ntBASIC1.46□□□□□ -2.18
SCN4AP35499 SNORA31.25-201ENST00000517242 134 ntBASIC1.46□□□□□ -2.18
SCN4AP35499 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC1.46□□□□□ -2.18
SCN4AP35499 AC090821.2-201ENST00000523552 176 ntBASIC1.46□□□□□ -2.18
SCN4AP35499 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.46□□□□□ -2.18
SCN4AP35499 AC087883.1-201ENST00000551882 391 ntBASIC1.46□□□□□ -2.18
SCN4AP35499 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.46□□□□□ -2.18
SCN4AP35499 AC008088.1-201ENST00000580993 280 ntBASIC1.46□□□□□ -2.18
SCN4AP35499 RN7SL793P-201ENST00000583259 296 ntBASIC1.46□□□□□ -2.18
SCN4AP35499 MIR548AB-201ENST00000584917 84 ntBASIC1.46□□□□□ -2.18
SCN4AP35499 AC008749.1-201ENST00000597650 306 ntBASIC1.46□□□□□ -2.18
SCN4AP35499 AL021997.1-201ENST00000605757 193 ntBASIC1.46□□□□□ -2.18
SCN4AP35499 AP001486.3-201ENST00000615334 372 ntBASIC1.46□□□□□ -2.18
SCN4AP35499 MIR454-201ENST00000390180 115 ntBASIC1.45□□□□□ -2.18
SCN4AP35499 RNA5SP465-201ENST00000391195 109 ntBASIC1.45□□□□□ -2.18
SCN4AP35499 MIR1285-1-201ENST00000408593 84 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 164.8 ms