Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RNU6-1298P-201ENST00000362456 101 ntBASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RNU4-56P-201ENST00000364700 142 ntBASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RNU6-384P-201ENST00000364900 104 ntBASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RNU6-318P-201ENST00000384283 103 ntBASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 MIR1250-201ENST00000408098 113 ntBASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 SNORD12B-201ENST00000410433 91 ntBASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AL592148.1-201ENST00000413568 445 ntBASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 POLR2KP2-201ENST00000438155 177 ntBASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AL137159.1-201ENST00000452808 512 ntBASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RPS4XP22-201ENST00000480755 780 ntBASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RN7SKP277-201ENST00000516895 283 ntBASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC112693.2-201ENST00000556538 232 ntBASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC087499.8-201ENST00000578406 226 ntBASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 MIR548X2-201ENST00000579776 100 ntBASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RPL12P50-201ENST00000603116 116 ntBASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC005046.1-201ENST00000608515 625 ntBASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AL008718.3-201ENST00000610217 321 ntBASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 Clostridiales-1.2-201ENST00000636724 160 ntBASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AL359693.1-201ENST00000614959 2407 ntBASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 Y_RNA.71-201ENST00000362892 104 ntBASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 U1.1-201ENST00000384101 164 ntBASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 Y_RNA.446-201ENST00000384178 104 ntBASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RNA5SP56-201ENST00000410277 118 ntBASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 SSXP9-201ENST00000417503 292 ntBASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 BTF3L4P4-201ENST00000506381 449 ntBASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AC005476.1-201ENST00000554427 397 ntBASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RPL23AP88-201ENST00000605759 454 ntBASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 SNORA62.6-201ENST00000606322 83 ntBASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AC005828.6-201ENST00000606610 232 ntBASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 IPO8P1-201ENST00000455509 3109 ntBASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 NCAPGP1-201ENST00000505112 1814 ntBASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC5.01□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC5.01□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 Y_RNA.7-201ENST00000362352 102 ntBASIC5.01□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 Y_RNA.218-201ENST00000364218 104 ntBASIC5.01□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RNU6-17P-201ENST00000384245 107 ntBASIC5.01□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RNU6-18P-201ENST00000384527 107 ntBASIC5.01□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 Y_RNA.570-201ENST00000384750 101 ntBASIC5.01□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RNA5SP120-201ENST00000410900 112 ntBASIC5.01□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC5.01□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AC087588.1-201ENST00000462203 316 ntBASIC5.01□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AC097462.2-201ENST00000504623 481 ntBASIC5.01□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RNA5SP272-201ENST00000516095 111 ntBASIC5.01□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RNU6-971P-201ENST00000516920 106 ntBASIC5.01□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AC012493.2-201ENST00000595083 291 ntBASIC5.01□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC5.01□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC5.01□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RNU6-653P-201ENST00000363074 106 ntBASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 Y_RNA.217-201ENST00000364214 105 ntBASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RNU6-76P-201ENST00000384060 104 ntBASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RNU6-80P-201ENST00000384195 107 ntBASIC5□□□□□ -1.61
SENP3-EIF4A1A0A087X0R7 RNU6-1025P-201ENST00000410629 104 ntBASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 346.2 ms