Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC000123.3-201ENST00000624029 4975 ntBASIC5.08□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC5.08□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC5.07□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 MIR449A-201ENST00000362113 91 ntBASIC5.07□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 Y_RNA.33-201ENST00000362591 102 ntBASIC5.07□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 Y_RNA.123-201ENST00000363338 102 ntBASIC5.07□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 Y_RNA.136-201ENST00000363444 102 ntBASIC5.07□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RNU4-9P-201ENST00000364951 139 ntBASIC5.07□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 SNORA40.19-201ENST00000390846 128 ntBASIC5.07□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RPS20P1-201ENST00000434853 354 ntBASIC5.07□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 NDUFB1P1-201ENST00000435191 180 ntBASIC5.07□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 CR769767.1-201ENST00000436337 346 ntBASIC5.07□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC016700.2-201ENST00000446011 156 ntBASIC5.07□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 snoU13.30-201ENST00000458951 104 ntBASIC5.07□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RPL23AP45-201ENST00000476406 468 ntBASIC5.07□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC106707.2-201ENST00000484182 374 ntBASIC5.07□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RNU6-1333P-201ENST00000516162 93 ntBASIC5.07□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC5.07□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 TGIF1P1-201ENST00000558095 802 ntBASIC5.07□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC5.07□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 MIR4672-201ENST00000583126 81 ntBASIC5.07□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC5.07□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC123786.2-201ENST00000603459 275 ntBASIC5.07□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC006023.1-201ENST00000603944 259 ntBASIC5.07□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AL035425.3-201ENST00000564206 4996 ntBASIC5.07□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC007656.2-201ENST00000624902 4547 ntBASIC5.07□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 OR4G2P-202ENST00000641004 1759 ntBASIC5.06□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC010332.2-201ENST00000613083 1904 ntBASIC5.06□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RNU6-1155P-201ENST00000363554 107 ntBASIC5.06□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 Y_RNA.571-201ENST00000384753 98 ntBASIC5.06□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 LAP3P1-201ENST00000403648 294 ntBASIC5.06□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RNA5SP104-201ENST00000410989 118 ntBASIC5.06□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC5.06□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC5.06□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC5.06□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC5.06□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AL133393.1-201ENST00000603277 287 ntBASIC5.06□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 Y_RNA.778-201ENST00000620203 90 ntBASIC5.06□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC5.06□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AL451142.2-201ENST00000429076 2090 ntBASIC5.06□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.06□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AL109809.4-201ENST00000603520 2185 ntBASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 MIR412-201ENST00000362142 91 ntBASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 Y_RNA.23-201ENST00000362496 106 ntBASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RNU4-84P-201ENST00000364200 139 ntBASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 MIR186-201ENST00000384988 86 ntBASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 MIR569-201ENST00000385228 96 ntBASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RPS4XP3-201ENST00000398541 413 ntBASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RNU2-52P-201ENST00000410680 190 ntBASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC024067.1-201ENST00000426199 223 ntBASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RPS15AP7-201ENST00000439294 405 ntBASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC117440.1-201ENST00000474107 571 ntBASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RN7SL271P-201ENST00000487601 295 ntBASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RNU6-1095P-201ENST00000516148 108 ntBASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC008489.1-201ENST00000524271 483 ntBASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RPL21P9-201ENST00000556149 474 ntBASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC008749.1-201ENST00000597650 306 ntBASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AL161629.2-201ENST00000615347 275 ntBASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 IGHVIII-44-202ENST00000636235 289 ntBASIC5.05□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 UBE2L2-201ENST00000254302 429 ntBASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RNU6-834P-201ENST00000362367 110 ntBASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RNU6-222P-201ENST00000362438 107 ntBASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RNU5B-2P-201ENST00000363036 113 ntBASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RNU6-151P-201ENST00000364158 107 ntBASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RNU6-879P-201ENST00000364328 108 ntBASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 SNORD116-14-201ENST00000383894 92 ntBASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 SNORD116-17-201ENST00000383929 92 ntBASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 SNORD116-15-201ENST00000384445 92 ntBASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RNU6-843P-201ENST00000384454 104 ntBASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 SNORD116-20-201ENST00000384529 92 ntBASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 SNORD116-19-201ENST00000384729 92 ntBASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AL035423.1-201ENST00000420331 213 ntBASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AL121890.1-201ENST00000435457 205 ntBASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AL589765.3-201ENST00000446084 462 ntBASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RNU6-927P-201ENST00000516199 100 ntBASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RN7SKP272-201ENST00000516988 232 ntBASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 CYCSP30-201ENST00000546447 172 ntBASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC060766.3-201ENST00000591442 263 ntBASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC008121.1-201ENST00000603244 268 ntBASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC5.04□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 186.7 ms