Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC080013.3-201ENST00000606839 578 ntBASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 MIR2909-201ENST00000617113 69 ntBASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 AC024581.2-201ENST00000619986 252 ntBASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 AC092125.1-201ENST00000562568 1995 ntBASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 ZNF736P9Y-201ENST00000439586 1345 ntBASIC1.39□□□□□ -2.19
SHANK3Q9BYB0 RNU5A-8P-201ENST00000364102 114 ntBASIC1.38□□□□□ -2.19
SHANK3Q9BYB0 MIR95-201ENST00000385072 81 ntBASIC1.38□□□□□ -2.19
SHANK3Q9BYB0 MIR561-201ENST00000385216 97 ntBASIC1.38□□□□□ -2.19
SHANK3Q9BYB0 AC078974.1-201ENST00000411597 223 ntBASIC1.38□□□□□ -2.19
SHANK3Q9BYB0 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC1.38□□□□□ -2.19
SHANK3Q9BYB0 BTF3L4P3-201ENST00000418879 476 ntBASIC1.38□□□□□ -2.19
SHANK3Q9BYB0 AL109913.1-201ENST00000421173 514 ntBASIC1.38□□□□□ -2.19
SHANK3Q9BYB0 AC092648.1-201ENST00000425870 423 ntBASIC1.38□□□□□ -2.19
SHANK3Q9BYB0 AC004383.1-201ENST00000438135 289 ntBASIC1.38□□□□□ -2.19
SHANK3Q9BYB0 JTBP1-201ENST00000441314 247 ntBASIC1.38□□□□□ -2.19
SHANK3Q9BYB0 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.38□□□□□ -2.19
SHANK3Q9BYB0 AC093852.1-201ENST00000503587 266 ntBASIC1.38□□□□□ -2.19
SHANK3Q9BYB0 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC1.38□□□□□ -2.19
SHANK3Q9BYB0 RNU6-572P-201ENST00000516724 80 ntBASIC1.38□□□□□ -2.19
SHANK3Q9BYB0 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC1.38□□□□□ -2.19
SHANK3Q9BYB0 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.38□□□□□ -2.19
SHANK3Q9BYB0 LINC00933-203ENST00000559812 219 ntBASIC1.38□□□□□ -2.19
SHANK3Q9BYB0 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC1.38□□□□□ -2.19
SHANK3Q9BYB0 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC1.38□□□□□ -2.19
SHANK3Q9BYB0 AC025165.5-201ENST00000602802 578 ntBASIC1.38□□□□□ -2.19
SHANK3Q9BYB0 MTCYBP22-201ENST00000603788 447 ntBASIC1.38□□□□□ -2.19
SHANK3Q9BYB0 AC068276.1-201ENST00000605793 379 ntBASIC1.38□□□□□ -2.19
SHANK3Q9BYB0 AL365204.3-201ENST00000612448 685 ntBASIC1.38□□□□□ -2.19
SHANK3Q9BYB0 AC099654.9-201ENST00000637055 678 ntBASIC1.38□□□□□ -2.19
SHANK3Q9BYB0 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
SHANK3Q9BYB0 Y_RNA.274-201ENST00000364714 101 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 SNORA40.19-201ENST00000390846 128 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 AC137499.1-201ENST00000427602 88 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 AL121601.2-201ENST00000438019 707 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 AL161788.1-201ENST00000441805 169 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 AL357134.1-201ENST00000445848 426 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 RNU6-953P-201ENST00000459154 107 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 MTCYBP43-201ENST00000513621 740 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 MIR4529-201ENST00000578110 78 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 BNIP3P23-201ENST00000599655 511 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 AC025588.2-201ENST00000604851 466 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 HAUS6P2-201ENST00000433254 2404 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 AC138393.1-203ENST00000327086 343 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 DLEU2_6.3-201ENST00000340052 136 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 RNU6-486P-201ENST00000363116 107 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 RNA5SP125-201ENST00000364843 120 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 RNU5E-6P-201ENST00000365574 115 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 RNU6-658P-201ENST00000384606 106 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 MIR122-201ENST00000385044 85 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 AC127391.1-201ENST00000411737 98 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 ELOCP17-201ENST00000414751 326 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 AC097463.2-201ENST00000421074 142 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 LARP1BP3-201ENST00000437229 869 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 RPS15AP9-201ENST00000439856 381 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 MTND4P25-201ENST00000441039 533 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 AC018437.1-201ENST00000492214 406 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 MTATP6P9-201ENST00000515039 680 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 RNU6-581P-201ENST00000516214 105 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 AC012213.3-201ENST00000577199 777 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 MIR3146-201ENST00000580367 79 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 AL358072.1-201ENST00000604156 575 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 AL627230.6-201ENST00000611129 280 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 DLEU2_6.2-201ENST00000620994 136 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 MTND4P9-201ENST00000507819 1346 ntBASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.37□□□□□ -2.19
SHANK3Q9BYB0 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
SHANK3Q9BYB0 U8.3-201ENST00000363321 132 ntBASIC1.36□□□□□ -2.19
SHANK3Q9BYB0 RNY3P13-201ENST00000365542 102 ntBASIC1.36□□□□□ -2.19
SHANK3Q9BYB0 MIR676-201ENST00000390702 67 ntBASIC1.36□□□□□ -2.19
SHANK3Q9BYB0 AC119751.3-201ENST00000399720 670 ntBASIC1.36□□□□□ -2.19
SHANK3Q9BYB0 CIR1P3-201ENST00000405137 479 ntBASIC1.36□□□□□ -2.19
SHANK3Q9BYB0 NDUFS5P1-201ENST00000405668 289 ntBASIC1.36□□□□□ -2.19
SHANK3Q9BYB0 EDDM3CP-201ENST00000415977 425 ntBASIC1.36□□□□□ -2.19
SHANK3Q9BYB0 VPS26BP1-201ENST00000417155 755 ntBASIC1.36□□□□□ -2.19
SHANK3Q9BYB0 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC1.36□□□□□ -2.19
SHANK3Q9BYB0 CBX3P6-201ENST00000430257 527 ntBASIC1.36□□□□□ -2.19
SHANK3Q9BYB0 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC1.36□□□□□ -2.19
SHANK3Q9BYB0 AC012308.1-201ENST00000451232 178 ntBASIC1.36□□□□□ -2.19
SHANK3Q9BYB0 AC093899.1-201ENST00000457984 376 ntBASIC1.36□□□□□ -2.19
SHANK3Q9BYB0 AL121769.1-201ENST00000469473 401 ntBASIC1.36□□□□□ -2.19
SHANK3Q9BYB0 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC1.36□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 203.7 ms