Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.82■□□□□ 0.92
COPB1P53618 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COPB1P53618 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COPB1P53618 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COPB1P53618 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.82■□□□□ 0.92
COPB1P53618 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC20.82■□□□□ 0.92
COPB1P53618 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
COPB1P53618 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COPB1P53618 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COPB1P53618 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COPB1P53618 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.82■□□□□ 0.92
COPB1P53618 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC20.82■□□□□ 0.92
COPB1P53618 PRKY-204ENST00000533551 1019 ntBASIC20.82■□□□□ 0.92
COPB1P53618 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.82■□□□□ 0.92
COPB1P53618 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.82■□□□□ 0.92
COPB1P53618 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC20.82■□□□□ 0.92
COPB1P53618 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
COPB1P53618 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
COPB1P53618 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
COPB1P53618 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COPB1P53618 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.82■□□□□ 0.92
COPB1P53618 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COPB1P53618 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
COPB1P53618 COBL-210ENST00000632460 1941 ntTSL 5 BASIC20.82■□□□□ 0.92
COPB1P53618 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.82■□□□□ 0.92
COPB1P53618 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
COPB1P53618 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.81■□□□□ 0.92
COPB1P53618 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COPB1P53618 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COPB1P53618 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COPB1P53618 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COPB1P53618 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COPB1P53618 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COPB1P53618 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COPB1P53618 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COPB1P53618 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COPB1P53618 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
COPB1P53618 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.81■□□□□ 0.92
COPB1P53618 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20.81■□□□□ 0.92
COPB1P53618 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
COPB1P53618 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COPB1P53618 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.81■□□□□ 0.92
COPB1P53618 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.81■□□□□ 0.92
COPB1P53618 UNC93B5-201ENST00000530315 699 ntBASIC20.81■□□□□ 0.92
COPB1P53618 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.81■□□□□ 0.92
COPB1P53618 AC008403.3-201ENST00000598924 454 ntBASIC20.81■□□□□ 0.92
COPB1P53618 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COPB1P53618 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC20.81■□□□□ 0.92
COPB1P53618 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
COPB1P53618 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COPB1P53618 AL354751.1-201ENST00000412768 1863 ntBASIC20.81■□□□□ 0.92
COPB1P53618 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COPB1P53618 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.81■□□□□ 0.92
COPB1P53618 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COPB1P53618 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC20.81■□□□□ 0.92
COPB1P53618 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COPB1P53618 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COPB1P53618 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
COPB1P53618 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COPB1P53618 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
COPB1P53618 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC20.8■□□□□ 0.92
COPB1P53618 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COPB1P53618 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
COPB1P53618 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COPB1P53618 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC20.8■□□□□ 0.92
COPB1P53618 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COPB1P53618 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COPB1P53618 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COPB1P53618 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COPB1P53618 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
COPB1P53618 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COPB1P53618 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.8■□□□□ 0.92
COPB1P53618 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
COPB1P53618 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COPB1P53618 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COPB1P53618 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COPB1P53618 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COPB1P53618 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
COPB1P53618 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COPB1P53618 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COPB1P53618 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.79■□□□□ 0.92
COPB1P53618 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COPB1P53618 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COPB1P53618 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.79■□□□□ 0.92
COPB1P53618 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COPB1P53618 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC20.79■□□□□ 0.92
COPB1P53618 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC20.79■□□□□ 0.92
COPB1P53618 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
COPB1P53618 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COPB1P53618 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COPB1P53618 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.79■□□□□ 0.92
COPB1P53618 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.79■□□□□ 0.92
COPB1P53618 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.79■□□□□ 0.92
COPB1P53618 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
COPB1P53618 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COPB1P53618 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
COPB1P53618 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COPB1P53618 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COPB1P53618 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COPB1P53618 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms