Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AL159169.1-201ENST00000421119 127 ntBASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 AL591043.1-201ENST00000432461 424 ntBASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 AL513043.1-201ENST00000439124 535 ntBASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 PRDX3P3-201ENST00000447765 522 ntBASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 HSPE1P25-201ENST00000455484 251 ntBASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 RNU6-953P-201ENST00000459154 107 ntBASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 RPL9P9-202ENST00000466501 579 ntBASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 SNORA70.14-201ENST00000516205 110 ntBASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 RNA5SP179-201ENST00000517284 121 ntBASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 TOMM20P2-201ENST00000540082 421 ntBASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 AC091167.4-201ENST00000605079 184 ntBASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 AC123912.5-201ENST00000605470 343 ntBASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 AC011921.3-201ENST00000605540 361 ntBASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 AC097372.5-201ENST00000623665 376 ntBASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
CCDC39Q9UFE4 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 AC007685.1-201ENST00000329806 452 ntBASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 RNU6-989P-201ENST00000362756 107 ntBASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 Y_RNA.324-201ENST00000365165 102 ntBASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 Y_RNA.358-201ENST00000365491 99 ntBASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 RNU6-1035P-201ENST00000384477 107 ntBASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 MIR521-1-201ENST00000384902 87 ntBASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 MIR141-201ENST00000384975 95 ntBASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 RNU6-817P-201ENST00000391083 104 ntBASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 AC099677.1-201ENST00000420575 175 ntBASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 RANP8-201ENST00000444720 713 ntBASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 RNU6-1037P-201ENST00000459571 107 ntBASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 AC074133.1-201ENST00000515696 183 ntBASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 AC027288.2-201ENST00000553028 243 ntBASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 AL162424.1-201ENST00000602325 221 ntBASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 AL591034.3-201ENST00000605511 685 ntBASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 RMST_8.1-201ENST00000610287 165 ntBASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 AC108706.1-201ENST00000611053 297 ntBASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 AL365222.1-201ENST00000614661 98 ntBASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC39Q9UFE4 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 RNU4-90P-201ENST00000362773 141 ntBASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 SNORA62-201ENST00000365493 153 ntBASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 MIR190B-201ENST00000401119 79 ntBASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 RNU6-651P-201ENST00000411040 105 ntBASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 RPL23AP36-201ENST00000413895 458 ntBASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 PIGFP3-201ENST00000441918 722 ntBASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 AP000873.1-201ENST00000463987 400 ntBASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 AC078817.1-201ENST00000492623 435 ntBASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 AP006245.1-201ENST00000522549 120 ntBASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 AL590705.4-201ENST00000532209 134 ntBASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 SNRPGP16-201ENST00000533275 226 ntBASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 MDM2-232ENST00000544561 213 ntTSL 5 BASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 AC023824.2-201ENST00000566185 400 ntBASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 MIR6867-201ENST00000610636 67 ntBASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 AC240442.1-201ENST00000616055 283 ntBASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC39Q9UFE4 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC39Q9UFE4 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC4.41□□□□□ -1.7
CCDC39Q9UFE4 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.41□□□□□ -1.7
CCDC39Q9UFE4 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.41□□□□□ -1.7
CCDC39Q9UFE4 Y_RNA.497-201ENST00000384447 98 ntBASIC4.41□□□□□ -1.7
CCDC39Q9UFE4 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
CCDC39Q9UFE4 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
CCDC39Q9UFE4 RPL21P65-201ENST00000406094 466 ntBASIC4.41□□□□□ -1.7
CCDC39Q9UFE4 SNORA11B-201ENST00000408175 129 ntBASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 161.2 ms