Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 MIR3074-201ENST00000384885 81 ntBASIC3.97□□□□□ -1.77
EPHB3P54753 MIR301A-201ENST00000385261 86 ntBASIC3.97□□□□□ -1.77
EPHB3P54753 RNU6-493P-201ENST00000391321 108 ntBASIC3.97□□□□□ -1.77
EPHB3P54753 RNA5SP104-201ENST00000410989 118 ntBASIC3.97□□□□□ -1.77
EPHB3P54753 SNORD56-201ENST00000413522 71 ntBASIC3.97□□□□□ -1.77
EPHB3P54753 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.97□□□□□ -1.77
EPHB3P54753 TMEM167AP1-201ENST00000423409 219 ntBASIC3.97□□□□□ -1.77
EPHB3P54753 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC3.97□□□□□ -1.77
EPHB3P54753 HMGN2P31-201ENST00000432430 273 ntBASIC3.97□□□□□ -1.77
EPHB3P54753 RPL23AP22-201ENST00000437556 453 ntBASIC3.97□□□□□ -1.77
EPHB3P54753 RN7SKP210-201ENST00000459176 261 ntBASIC3.97□□□□□ -1.77
EPHB3P54753 RPL31P61-201ENST00000496160 376 ntBASIC3.97□□□□□ -1.77
EPHB3P54753 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.97□□□□□ -1.77
EPHB3P54753 SERF1AP1-201ENST00000514575 187 ntBASIC3.97□□□□□ -1.77
EPHB3P54753 MIR2355-201ENST00000517199 87 ntBASIC3.97□□□□□ -1.77
EPHB3P54753 IGHVII-53-1-201ENST00000519538 255 ntBASIC3.97□□□□□ -1.77
EPHB3P54753 AC007458.1-201ENST00000542812 373 ntBASIC3.97□□□□□ -1.77
EPHB3P54753 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.97□□□□□ -1.77
EPHB3P54753 AC069240.1-201ENST00000548774 375 ntBASIC3.97□□□□□ -1.77
EPHB3P54753 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.97□□□□□ -1.77
EPHB3P54753 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
EPHB3P54753 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
EPHB3P54753 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
EPHB3P54753 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.96□□□□□ -1.77
EPHB3P54753 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.96□□□□□ -1.78
EPHB3P54753 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
EPHB3P54753 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
EPHB3P54753 UBE2L2-201ENST00000254302 429 ntBASIC3.96□□□□□ -1.78
EPHB3P54753 RNU6-384P-201ENST00000364900 104 ntBASIC3.96□□□□□ -1.78
EPHB3P54753 SNORA70.4-201ENST00000365509 134 ntBASIC3.96□□□□□ -1.78
EPHB3P54753 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.96□□□□□ -1.78
EPHB3P54753 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.96□□□□□ -1.78
EPHB3P54753 AC093578.1-201ENST00000415219 368 ntBASIC3.96□□□□□ -1.78
EPHB3P54753 AL117339.3-201ENST00000418733 162 ntBASIC3.96□□□□□ -1.78
EPHB3P54753 EIF1P2-201ENST00000428233 350 ntBASIC3.96□□□□□ -1.78
EPHB3P54753 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.78
EPHB3P54753 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC3.96□□□□□ -1.78
EPHB3P54753 AC078918.1-201ENST00000498515 228 ntBASIC3.96□□□□□ -1.78
EPHB3P54753 AC104619.4-201ENST00000510773 249 ntBASIC3.96□□□□□ -1.78
EPHB3P54753 AC026726.1-201ENST00000512859 601 ntBASIC3.96□□□□□ -1.78
EPHB3P54753 GMPSP1-201ENST00000514075 579 ntBASIC3.96□□□□□ -1.78
EPHB3P54753 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.96□□□□□ -1.78
EPHB3P54753 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.96□□□□□ -1.78
EPHB3P54753 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.96□□□□□ -1.78
EPHB3P54753 AC104581.2-201ENST00000572227 430 ntBASIC3.96□□□□□ -1.78
EPHB3P54753 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC3.96□□□□□ -1.78
EPHB3P54753 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.96□□□□□ -1.78
EPHB3P54753 AL139395.1-201ENST00000603662 160 ntBASIC3.96□□□□□ -1.78
EPHB3P54753 SNORA62.6-201ENST00000606322 83 ntBASIC3.96□□□□□ -1.78
EPHB3P54753 U3.45-201ENST00000607547 219 ntBASIC3.96□□□□□ -1.78
EPHB3P54753 AC107294.1-201ENST00000609524 467 ntBASIC3.96□□□□□ -1.78
EPHB3P54753 AC012314.7-201ENST00000619693 93 ntBASIC3.96□□□□□ -1.78
EPHB3P54753 AL353748.2-201ENST00000622148 471 ntBASIC3.96□□□□□ -1.78
EPHB3P54753 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
EPHB3P54753 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
EPHB3P54753 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.96□□□□□ -1.78
EPHB3P54753 AC007785.2-201ENST00000598627 1916 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.95□□□□□ -1.78
EPHB3P54753 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.95□□□□□ -1.78
EPHB3P54753 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.95□□□□□ -1.78
EPHB3P54753 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
EPHB3P54753 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
EPHB3P54753 Y_RNA.33-201ENST00000362591 102 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 RNU6-37P-201ENST00000362692 107 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 Y_RNA.143-201ENST00000363520 106 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 RNU6-11P-201ENST00000364234 107 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 RNU6-335P-201ENST00000364563 113 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 RNU6-7-201ENST00000364784 107 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 RNU6-8-201ENST00000365467 107 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 Y_RNA.358-201ENST00000365491 99 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 RNU6-827P-201ENST00000365553 106 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 RNU6-25P-201ENST00000383873 107 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 RNY1P5-201ENST00000383890 115 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 RNU6-1-201ENST00000383898 107 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 RNU6-36P-201ENST00000384172 107 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 RNU6-4P-201ENST00000384205 107 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 RNU6-5P-201ENST00000384238 107 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 RNU6-3P-201ENST00000384314 107 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 RNU6-16P-201ENST00000384385 107 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 RNU6-15P-201ENST00000384534 107 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 RNU6-2-201ENST00000384627 107 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 RNU6-29P-201ENST00000384637 107 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 RNU6-9-201ENST00000384776 107 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
EPHB3P54753 SNORA12.2-201ENST00000391040 156 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 AL513331.1-201ENST00000411908 397 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 MTATP6P4-201ENST00000427725 675 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 FTH1P6-201ENST00000430768 320 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC3.95□□□□□ -1.78
EPHB3P54753 NDUFB4P10-201ENST00000452541 359 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 AC106707.2-201ENST00000484182 374 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.95□□□□□ -1.78
EPHB3P54753 AC025755.1-201ENST00000521306 278 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
EPHB3P54753 AC087441.2-201ENST00000529141 262 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 MRPS36P4-201ENST00000534436 298 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 AC244505.7-201ENST00000599675 272 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 Z83818.1-201ENST00000603584 150 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 MZT1P2-201ENST00000604387 248 ntBASIC3.95□□□□□ -1.78
EPHB3P54753 RNU1-30P-201ENST00000606575 163 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 260 ms