Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC61Q9Y6R9 DEFB108F-201ENST00000344638 222 ntBASIC6.35□□□□□ -1.39
CCDC61Q9Y6R9 Y_RNA.310-201ENST00000365063 113 ntBASIC6.35□□□□□ -1.39
CCDC61Q9Y6R9 MIR544A-201ENST00000384855 91 ntBASIC6.35□□□□□ -1.39
CCDC61Q9Y6R9 RNU6-440P-201ENST00000390882 105 ntBASIC6.35□□□□□ -1.39
CCDC61Q9Y6R9 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
CCDC61Q9Y6R9 RNU6-383P-201ENST00000410864 94 ntBASIC6.35□□□□□ -1.39
CCDC61Q9Y6R9 AC007738.1-201ENST00000413892 348 ntBASIC6.35□□□□□ -1.39
CCDC61Q9Y6R9 RN7SL810P-201ENST00000493031 276 ntBASIC6.35□□□□□ -1.39
CCDC61Q9Y6R9 RNU6ATAC17P-201ENST00000516074 71 ntBASIC6.35□□□□□ -1.39
CCDC61Q9Y6R9 RNU6-1256P-201ENST00000516539 103 ntBASIC6.35□□□□□ -1.39
CCDC61Q9Y6R9 SNX18P3-202ENST00000565670 1750 ntBASIC6.35□□□□□ -1.39
CCDC61Q9Y6R9 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC6.35□□□□□ -1.39
CCDC61Q9Y6R9 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
CCDC61Q9Y6R9 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC6.35□□□□□ -1.39
CCDC61Q9Y6R9 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC61Q9Y6R9 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC61Q9Y6R9 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC61Q9Y6R9 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC61Q9Y6R9 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC61Q9Y6R9 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC61Q9Y6R9 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC6.34□□□□□ -1.39
CCDC61Q9Y6R9 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC6.34□□□□□ -1.39
CCDC61Q9Y6R9 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC6.34□□□□□ -1.39
CCDC61Q9Y6R9 AC022893.2-201ENST00000564832 3296 ntBASIC6.34□□□□□ -1.39
CCDC61Q9Y6R9 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC61Q9Y6R9 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC61Q9Y6R9 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC61Q9Y6R9 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC61Q9Y6R9 RNA5SP125-201ENST00000364843 120 ntBASIC6.34□□□□□ -1.39
CCDC61Q9Y6R9 CYP4F29P-201ENST00000420685 446 ntBASIC6.34□□□□□ -1.39
CCDC61Q9Y6R9 HMGB1P37-201ENST00000439613 609 ntBASIC6.34□□□□□ -1.39
CCDC61Q9Y6R9 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC6.34□□□□□ -1.39
CCDC61Q9Y6R9 AC022790.1-201ENST00000522872 204 ntBASIC6.34□□□□□ -1.39
CCDC61Q9Y6R9 AL121603.1-201ENST00000553815 142 ntBASIC6.34□□□□□ -1.39
CCDC61Q9Y6R9 AC007224.1-201ENST00000564410 144 ntBASIC6.34□□□□□ -1.39
CCDC61Q9Y6R9 AC015720.1-201ENST00000565251 277 ntBASIC6.34□□□□□ -1.39
CCDC61Q9Y6R9 AC007012.1-201ENST00000567192 175 ntBASIC6.34□□□□□ -1.39
CCDC61Q9Y6R9 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC6.34□□□□□ -1.39
CCDC61Q9Y6R9 CCT7-217ENST00000626868 249 ntTSL 5 BASIC6.34□□□□□ -1.39
CCDC61Q9Y6R9 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC61Q9Y6R9 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC61Q9Y6R9 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
CCDC61Q9Y6R9 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
CCDC61Q9Y6R9 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC6.34□□□□□ -1.4
CCDC61Q9Y6R9 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC6.34□□□□□ -1.4
CCDC61Q9Y6R9 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC6.34□□□□□ -1.4
CCDC61Q9Y6R9 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC6.33□□□□□ -1.4
CCDC61Q9Y6R9 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
CCDC61Q9Y6R9 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC6.33□□□□□ -1.4
CCDC61Q9Y6R9 AC004656.1-201ENST00000568479 4951 ntBASIC6.33□□□□□ -1.4
CCDC61Q9Y6R9 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC6.33□□□□□ -1.4
CCDC61Q9Y6R9 RNU6-1080P-201ENST00000383982 107 ntBASIC6.33□□□□□ -1.4
CCDC61Q9Y6R9 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC6.33□□□□□ -1.4
CCDC61Q9Y6R9 AC007969.2-201ENST00000441891 191 ntBASIC6.33□□□□□ -1.4
CCDC61Q9Y6R9 AL590399.6-201ENST00000446396 307 ntBASIC6.33□□□□□ -1.4
CCDC61Q9Y6R9 AL451050.1-201ENST00000450126 415 ntBASIC6.33□□□□□ -1.4
CCDC61Q9Y6R9 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC6.33□□□□□ -1.4
CCDC61Q9Y6R9 RPL7AP28-201ENST00000464513 571 ntBASIC6.33□□□□□ -1.4
CCDC61Q9Y6R9 RNA5SP281-201ENST00000516504 135 ntBASIC6.33□□□□□ -1.4
CCDC61Q9Y6R9 RN7SKP234-201ENST00000517173 224 ntBASIC6.33□□□□□ -1.4
CCDC61Q9Y6R9 IGLVIV-65-201ENST00000517313 360 ntBASIC6.33□□□□□ -1.4
CCDC61Q9Y6R9 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC6.33□□□□□ -1.4
CCDC61Q9Y6R9 AP003730.1-201ENST00000524605 285 ntBASIC6.33□□□□□ -1.4
CCDC61Q9Y6R9 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
CCDC61Q9Y6R9 AL133383.2-201ENST00000622958 2336 ntBASIC6.33□□□□□ -1.4
CCDC61Q9Y6R9 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
CCDC61Q9Y6R9 AL450326.2-201ENST00000421913 1962 ntBASIC6.33□□□□□ -1.4
CCDC61Q9Y6R9 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
CCDC61Q9Y6R9 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
CCDC61Q9Y6R9 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC61Q9Y6R9 AC073073.2-201ENST00000609827 2578 ntBASIC6.32□□□□□ -1.4
CCDC61Q9Y6R9 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC61Q9Y6R9 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC6.32□□□□□ -1.4
CCDC61Q9Y6R9 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
CCDC61Q9Y6R9 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC6.32□□□□□ -1.4
CCDC61Q9Y6R9 AL356867.1-201ENST00000429623 299 ntBASIC6.32□□□□□ -1.4
CCDC61Q9Y6R9 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC6.32□□□□□ -1.4
CCDC61Q9Y6R9 RPL23AP93-201ENST00000440847 484 ntBASIC6.32□□□□□ -1.4
CCDC61Q9Y6R9 RPL39P40-201ENST00000445481 146 ntBASIC6.32□□□□□ -1.4
CCDC61Q9Y6R9 SNRPGP8-201ENST00000454064 226 ntBASIC6.32□□□□□ -1.4
CCDC61Q9Y6R9 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC6.32□□□□□ -1.4
CCDC61Q9Y6R9 LINC00933-203ENST00000559812 219 ntBASIC6.32□□□□□ -1.4
CCDC61Q9Y6R9 AC025946.2-201ENST00000603398 234 ntBASIC6.32□□□□□ -1.4
CCDC61Q9Y6R9 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC61Q9Y6R9 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC61Q9Y6R9 ADAM5-202ENST00000399789 1942 ntBASIC6.31□□□□□ -1.4
CCDC61Q9Y6R9 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC6.31□□□□□ -1.4
CCDC61Q9Y6R9 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC61Q9Y6R9 RNU6-799P-201ENST00000363567 107 ntBASIC6.31□□□□□ -1.4
CCDC61Q9Y6R9 RNY1P7-201ENST00000384743 110 ntBASIC6.31□□□□□ -1.4
CCDC61Q9Y6R9 AC244670.1-201ENST00000436879 112 ntBASIC6.31□□□□□ -1.4
CCDC61Q9Y6R9 AL445687.1-201ENST00000439946 251 ntBASIC6.31□□□□□ -1.4
CCDC61Q9Y6R9 AC009237.8-201ENST00000445492 379 ntBASIC6.31□□□□□ -1.4
CCDC61Q9Y6R9 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC6.31□□□□□ -1.4
CCDC61Q9Y6R9 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC6.31□□□□□ -1.4
CCDC61Q9Y6R9 RN7SL98P-201ENST00000462271 300 ntBASIC6.31□□□□□ -1.4
CCDC61Q9Y6R9 RNU6-197P-201ENST00000516680 100 ntBASIC6.31□□□□□ -1.4
CCDC61Q9Y6R9 CYCSP29-201ENST00000533731 318 ntBASIC6.31□□□□□ -1.4
CCDC61Q9Y6R9 AL020997.2-201ENST00000602607 184 ntBASIC6.31□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 187.5 ms